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@SFGLab

Structural and Functional Genomics Laboratory

PLEWCZYNSKI LAB: Laboratory of Bioinformatics and Computational Genomics (LBCG @ MiNI WUT) Laboratory of Functional and Structural Genomics (LFSG @ CeNT UW)

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  1. ConsensuSV-pipeline ConsensuSV-pipeline Public

    Automatised pipeline of ConsensuSV workflow.

    Python 23 1

  2. bertrand bertrand Public

    Jupyter Notebook 9

  3. ConsensuSV-core ConsensuSV-core Public

    A tool for getting consensus of SVs.

    Python 7 1

  4. HiCDiffusion HiCDiffusion Public

    Python 6 1

  5. ConsensuSV-ONT-pipeline ConsensuSV-ONT-pipeline Public

    Python 5 1

  6. nf-hichip nf-hichip Public

    Pipeline for processing HiChIP data.

    Jupyter Notebook 3 1

Repositories

Showing 10 of 32 repositories
  • bioai-hackathon Public
    SFGLab/bioai-hackathon’s past year of commit activity
    0 0 0 0 Updated Feb 17, 2025
  • pyLoopSage Public

    Updated version of the stochastic loop extrusion model: LoopSage with capability to run incredibly fast, parallelized across CPU cores. This package is even more user-friendly and it can be installed via PyPI.

    SFGLab/pyLoopSage’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Feb 13, 2025
  • Polymer_model_benchmark Public
    SFGLab/Polymer_model_benchmark’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Feb 12, 2025
  • ChromMovie Public

    Model for simultaneous 3D chromatin modeling from scHi-C maps

    SFGLab/ChromMovie’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Feb 6, 2025
  • MultiMM Public

    A genomewide multiscale energy minimization model.

    SFGLab/MultiMM’s past year of commit activity
    Python 1 GPL-2.0 1 0 0 Updated Jan 31, 2025
  • RepliSage Public

    A software that simulates the motionof cohesin during replication process.

    SFGLab/RepliSage’s past year of commit activity
    Jupyter Notebook 1 AGPL-3.0 0 0 0 Updated Jan 30, 2025
  • nf-hichip Public

    Pipeline for processing HiChIP data.

    SFGLab/nf-hichip’s past year of commit activity
    Jupyter Notebook 3 1 0 0 Updated Dec 30, 2024
  • LoopSage Public

    An energy-based model for loop extrusion.

    SFGLab/LoopSage’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Nov 19, 2024
  • HiCDiffusion Public
    SFGLab/HiCDiffusion’s past year of commit activity
    Python 6 MIT 1 0 0 Updated Oct 24, 2024
  • intrinsic_linking_analysis Public

    Analysis for the "Intrinsic linking of chromatin fiber in human cells" manuscript.

    SFGLab/intrinsic_linking_analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 16, 2024
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