Merge pull request #1539 from SMI/release/5.4.0

Release v5.4.0

CHANGELOG.md

@@ -11,6 +11,42 @@ A raw git diff can be seen [here][unreleased].
 
 <!--next-->
 
+## [5.4.0] 2023-04-25
+
+## Feature
+
+-   [#1489](https://github.com/SMI/SmiServices/pull/1489) by howff. CTP_DicomToText has options to control the output formatting (especially redaction of HTML and replacement of newlines)
+
+## Bugfix
+
+-   [#1379](https://github.com/SMI/SmiServices/pull/1379) by rkm. Constrain protobuf version to "<3.20.0", since this is the last version which supports python3.6 and we only have 3.6 on the live system.
+-   [#1396](https://github.com/SMI/SmiServices/pull/1396) by jas88. Fix some issues encountered loading DICOM to Mongo in HIC deployment
+-   [#1399](https://github.com/SMI/SmiServices/pull/1399) by jas88. Revert to [email protected] due to disappearance of 3.7.0
+-   [#1430](https://github.com/SMI/SmiServices/pull/1430) by rkm. Add RabbitMQ management port to docker-compose files
+-   [#1431](https://github.com/SMI/SmiServices/pull/1431) by rkm. restrict mysql_connector_python version for python 3.6
+-   [#1448](https://github.com/SMI/SmiServices/pull/1448) by rkm. Add 0.1% threshold for Codecov to report CI failure
+-   [#1492](https://github.com/SMI/SmiServices/pull/1492) by rkm. add codecov token to CI
+-   [#1493](https://github.com/SMI/SmiServices/pull/1493) by rkm. ignore BasicRules.yaml in pre-commit codespell config
+-   [#1497](https://github.com/SMI/SmiServices/pull/1497) by rkm. Fix MongoDB Windows CI by changing to sc.exe
+-   [#1506](https://github.com/SMI/SmiServices/pull/1506) by darshad-github. Fix issue with hidden directories in extraction output paths generated by cohort extractor.
+-   [#1509](https://github.com/SMI/SmiServices/pull/1509) by jas88. Change Windows service control operation timeout to 300s since Mongo sometimes takes longer than the default 30s causing timeout errors otherwise
+
+## Doc
+
+-   [#1499](https://github.com/SMI/SmiServices/pull/1499) by karacolada. update CTP build docs
+
+## Meta
+
+-   [#1401](https://github.com/SMI/SmiServices/pull/1401) by rkm. Condense formatting options into .editorconfig and add more hooks
+-   [#1407](https://github.com/SMI/SmiServices/pull/1407) by rkm. Bump SDK to 6.0.403
+-   [#1428](https://github.com/SMI/SmiServices/pull/1428) by rkm. Add development support for ARM / M1 Mac
+-   [#1442](https://github.com/SMI/SmiServices/pull/1442) by rkm. Switch coverage to Codecov
+-   [#1450](https://github.com/SMI/SmiServices/pull/1450) by darshad-github. Update contributing.md with feature branch workflow guidelines
+-   [#1451](https://github.com/SMI/SmiServices/pull/1451) by rkm. adopt dotnet central package management (CPM)
+-   [#1468](https://github.com/SMI/SmiServices/pull/1468) by rkm. switch rabbitmq docker-compose images to include management plugin
+-   [#1494](https://github.com/SMI/SmiServices/pull/1494) by rkm. [actions] replace deprecated set-output with GITHUB_OUTPUT
+-   [#1496](https://github.com/SMI/SmiServices/pull/1496) by rkm. add CodeQL scan
+
 ## [5.3.0] 2022-11-08
 
 ## Feature
@@ -1174,7 +1210,8 @@ First stable release after importing the repository from the private
 -   Anonymous `MappingTableName` must now be fully specified to pass validation
     (e.g. `mydb.mytbl`). Previously skipping database portion was supported.
 
-[unreleased]: https://github.com/SMI/SmiServices/compare/v5.3.0...master
+[Unreleased]: https://github.com/SMI/SmiServices/compare/v5.4.0...master
+[5.4.0]: https://github.com/SMI/SmiServices/compare/v5.3.0...v5.4.0
 [5.3.0]: https://github.com/SMI/SmiServices/compare/v5.2.0...v5.3.0
 [5.2.0]: https://github.com/SMI/SmiServices/compare/v5.1.3...v5.2.0
 [5.1.3]: https://github.com/SMI/SmiServices/compare/v5.1.2...v5.1.3

README.md

@@ -5,7 +5,7 @@
 [![codecov](https://codecov.io/gh/SMI/SmiServices/branch/master/graph/badge.svg?token=O6G26DHLEY)](https://codecov.io/gh/SMI/SmiServices)
 ![GitHub](https://img.shields.io/github/license/SMI/SmiServices)
 
-Version: `5.3.0`
+Version: `5.4.0`
 
 # SMI Services
 

bin/release/updateChangelog.py

@@ -157,7 +157,6 @@ def main(argv: Optional[Sequence[str]] = None) -> int:
     cmd = (
         "npx",
         "prettier",
-        "--config", ".meta/prettierrc.yml",
         "--write", "CHANGELOG.md",
     )
     _run(cmd)

src/SharedAssemblyInfo.cs

@@ -7,6 +7,6 @@
 [assembly: AssemblyCulture("")]
 
 // These should be overwritten by release builds
-[assembly: AssemblyVersion("5.3.0")]
-[assembly: AssemblyFileVersion("5.3.0")]
-[assembly: AssemblyInformationalVersion("5.3.0")] // This one can have the extra build info after it
+[assembly: AssemblyVersion("5.4.0")]
+[assembly: AssemblyFileVersion("5.4.0")]
+[assembly: AssemblyInformationalVersion("5.4.0")] // This one can have the extra build info after it