v5.3.0
Feature
- #1259 by rkm. Add support for extraction processing failures
- Remove
IsIdentifiable
field fromExtractedFileVerificationMessage
and replace with newVerifiedFileStatus
enum - Update extraction job classes in
CohortPackager
to store this new field, and handle backwards-incompatibility when reading older extraction logs
- Remove
Bugfix
- #1285 by howff. Improve the removal of HTML tags from StructuredReport (SR) text
- #1314 by jas88. Replace SharpCompress usage due to buggy LZMA handling to fix issue #1313
- #1350 by tznind. Fix DicomRelationalMapper when running with a YamlRepository backend
Change
- #1270 by tznind. Rename yaml config file
IsIdentifiableBaseOptions
toIsIdentifiableOptions
and removed unused CLI verbs insmi
Meta
- #1261 by jas88. Update caching strategy in CI
What's Changed
- Ensure mongodb service started in Windows CI by @rkm in #1260
- Bump Microsoft.NET.Test.Sdk from 17.2.0 to 17.3.0 by @dependabot in #1262
- Bump SecurityCodeScan.VS2019 from 5.6.3 to 5.6.4 by @dependabot in #1263
- Bump mockito-core from 4.6.1 to 4.7.0 in /src/common/com.smi.microservices.parent by @dependabot in #1265
- Bump NLog from 5.0.1 to 5.0.2 by @dependabot in #1264
- CI update by @jas88 in #1261
- Bump System.IO.Abstractions.TestingHelpers from 17.0.24 to 17.1.1 by @dependabot in #1266
- Bump System.IO.Abstractions from 17.0.24 to 17.1.1 by @dependabot in #1267
- Bump SecurityCodeScan.VS2019 from 5.6.4 to 5.6.5 by @dependabot in #1268
- ii compatibility by @tznind in #1270
- Bump IsIdentifiable from 0.0.5 to 0.0.6 by @dependabot in #1272
- Bump SecurityCodeScan.VS2019 from 5.6.5 to 5.6.6 by @dependabot in #1274
- Bump HIC.FAnsiSql from 2.0.4 to 2.0.5 by @dependabot in #1276
- Bump HIC.RDMP.Dicom from 5.0.10 to 5.0.11 by @dependabot in #1278
- Bump IsIdentifiable from 0.0.6 to 0.0.7 by @dependabot in #1277
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #1275
- Bump logback-classic from 1.2.11 to 1.4.0 in /src/common/com.smi.microservices.parent by @dependabot in #1279
- Support extraction validation failure by @rkm in #1259
- Bump HIC.FAnsiSql from 2.0.5 to 3.0.0 by @dependabot in #1281
- Bump Microsoft.NET.Test.Sdk from 17.3.0 to 17.3.1 by @dependabot in #1284
- Bugfix/sr html by @howff in #1285
- Bump HIC.RDMP.Plugin from 7.0.17 to 7.0.18 by @dependabot in #1283
- Bump HIC.RDMP.Plugin.Test from 7.0.17 to 7.0.18 by @dependabot in #1282
- Bump NLog from 5.0.2 to 5.0.3 by @dependabot in #1286
- Bump NLog from 5.0.3 to 5.0.4 by @dependabot in #1288
- Bump Microsoft.CodeAnalysis.CSharp.Scripting from 4.2.0 to 4.3.0 by @dependabot in #1287
- Bump jackson-dataformat-yaml from 2.13.3 to 2.13.4 in /src/common/com.smi.microservices.parent by @dependabot in #1294
- Bump jackson-databind from 2.13.3 to 2.13.4 in /src/common/com.smi.microservices.parent by @dependabot in #1293
- Bump HIC.RDMP.Plugin from 7.0.18 to 7.0.19 by @dependabot in #1291
- [Snyk] Security upgrade com.fasterxml.jackson.dataformat:jackson-dataformat-yaml from 2.13.3 to 2.13.4 by @snyk-bot in #1290
- Bump HIC.RDMP.Plugin.Test from 7.0.18 to 7.0.19 by @dependabot in #1292
- Bump SecurityCodeScan.VS2019 from 5.6.6 to 5.6.7 by @dependabot in #1295
- Bump StackExchange.Redis from 2.6.48 to 2.6.66 by @dependabot in #1296
- Bump mockito-core from 4.7.0 to 4.8.0 in /src/common/com.smi.microservices.parent by @dependabot in #1297
- Bump actions/setup-java from 3.4.1 to 3.5.0 by @dependabot in #1300
- Bump HIC.RDMP.Plugin from 7.0.19 to 7.0.20 by @dependabot in #1298
- Bump HIC.RDMP.Plugin.Test from 7.0.19 to 7.0.20 by @dependabot in #1299
- Bump HIC.RDMP.Dicom from 5.0.11 to 5.0.12 by @dependabot in #1301
- Bump amqp-client from 5.15.0 to 5.16.0 in /src/common/com.smi.microservices.parent by @dependabot in #1306
- Bump System.IO.Abstractions.TestingHelpers from 17.1.1 to 17.2.1 by @dependabot in #1304
- Bump Spectre.Console from 0.44.0 to 0.45.0 by @dependabot in #1303
- Bump System.IO.Abstractions from 17.1.1 to 17.2.1 by @dependabot in #1302
- Bump NunitXml.TestLogger from 3.0.117 to 3.0.127 by @dependabot in #1305
- Bump logback-classic from 1.4.0 to 1.4.1 in /src/common/com.smi.microservices.parent by @dependabot in #1307
- Bump System.IO.Abstractions.TestingHelpers from 17.2.1 to 17.2.3 by @dependabot in #1309
- Bump YamlDotNet from 12.0.0 to 12.0.1 by @dependabot in #1308
- Bump System.IO.Abstractions from 17.2.1 to 17.2.3 by @dependabot in #1310
- Bump Terminal.Gui from 1.7.2 to 1.8.0 by @dependabot in #1311
- Bump Terminal.Gui from 1.8.0 to 1.8.2 by @dependabot in #1312
- Feature/libarchive loader by @jas88 in #1314
- Bump Microsoft.NET.Test.Sdk from 17.3.1 to 17.3.2 by @dependabot in #1316
- Bump actions/setup-java from 3.5.0 to 3.5.1 by @dependabot in #1317
- Bump HIC.RDMP.Plugin from 7.0.20 to 8.0.0 by @dependabot in #1320
- Bump HIC.RDMP.Plugin.Test from 7.0.20 to 8.0.0 by @dependabot in #1319
- Bump HIC.RDMP.Dicom from 5.0.12 to 6.0.0 by @dependabot in #1321
- Update dependabot.yml by @jas88 in #1318
- Update dependabot.yml by @jas88 in #1322
- Bump HIC.RDMP.Dicom from 6.0.0 to 6.0.1 by @dependabot in #1323
- Bump actions/setup-dotnet from 2 to 3.0.0 by @dependabot in #1324
- Bump Microsoft.CodeAnalysis.CSharp.Scripting from 4.3.0 to 4.3.1 by @dependabot in #1326
- Bump HIC.RDMP.Plugin.Test from 8.0.0 to 8.0.1 by @dependabot in #1325
- Bump logback-classic from 1.4.1 to 1.4.3 in /src/common/com.smi.microservices.parent by @dependabot in #1328
- Bump HIC.RDMP.Plugin from 8.0.0 to 8.0.1 by @dependabot in #1327
- Bump HIC.RDMP.Plugin from 8.0.1 to 8.0.2 by @dependabot in #1329
- Bump HIC.RDMP.Plugin.Test from 8.0.1 to 8.0.2 by @dependabot in #1330
- Bump actions/setup-dotnet from 3.0.0 to 3.0.1 by @dependabot in #1333
- Bump HIC.RDMP.Plugin from 8.0.2 to 8.0.3 by @dependabot in #1332
- Bump HIC.RDMP.Plugin.Test from 8.0.2 to 8.0.3 by @dependabot in #1331
- Bump CsvHelper from 28.0.1 to 29.0.0 by @dependabot in #1335
- Bump YamlDotNet from 12.0.1 to 12.0.2 by @dependabot in #1336
- Bump logback-classic from 1.4.3 to 1.4.4 in /src/common/com.smi.microservices.parent by @dependabot in #1337
- Bump jackson-databind from 2.13.4 to 2.13.4.1 in /src/common/com.smi.microservices.parent by @dependabot in #1338
- [Snyk] Security upgrade protobuf from 3.20.1 to 3.20.2 by @snyk-bot in #1315
- Bump jackson-databind from 2.13.4.1 to 2.13.4.2 in /src/common/com.smi.microservices.parent by @dependabot in #1340
- Bump actions/setup-dotnet from 3.0.1 to 3.0.2 by @dependabot in #1341
- Bump StackExchange.Redis from 2.6.66 to 2.6.70 by @dependabot in #1342
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #1343
- Bump actions/setup-java from 3.5.1 to 3.6.0 by @dependabot in #1344
- Bump mockito-core from 4.8.0 to 4.8.1 in /src/common/com.smi.microservices.parent by @dependabot in #1345
- Bump gson from 2.9.1 to 2.10 in /src/common/com.smi.microservices.parent by @dependabot in #1348
- Bump HIC.RDMP.Plugin from 8.0.3 to 8.0.4 by @dependabot in #1346
- Bump HIC.RDMP.Plugin.Test from 8.0.3 to 8.0.4 by @dependabot in #1347
- Remove bad cast that breaks DicomRelationalMapper SMI when running with YamlRepository by @tznind in #1350
- Bump LibArchive.Net from 0.1.1 to 0.1.2 by @dependabot in #1351
- Bump actions/setup-dotnet from 3.0.2 to 3.0.3 by @dependabot in #1352
- Bump NLog from 5.0.4 to 5.0.5 by @dependabot in #1349
- Bump HIC.FAnsiSql from 3.0.0 to 3.0.1 by @dependabot in #1354
- Bump coverlet.msbuild from 3.1.2 to 3.2.0 by @dependabot in #1356
- Bump NUnit3TestAdapter from 4.2.1 to 4.3.0 by @dependabot in #1355
- Bump HIC.RDMP.Plugin from 8.0.4 to 8.0.5 by @dependabot in #1360
- Bump HIC.BadMedicine.Dicom from 0.0.14 to 0.0.15 by @dependabot in #1357
- Bump HIC.RDMP.Dicom from 6.0.1 to 6.0.2 by @dependabot in #1358
- Bump IsIdentifiable from 0.0.7 to 0.0.8 by @dependabot in #1361
- Bump jackson-dataformat-yaml from 2.13.4 to 2.14.0 in /src/common/com.smi.microservices.parent by @dependabot in #1364
- Bump jackson-databind from 2.13.4.2 to 2.14.0 in /src/common/com.smi.microservices.parent by @dependabot in #1363
- Bump JetBrains.Annotations from 2022.1.0 to 2022.3.1 by @dependabot in #1365
- Bump Microsoft.Extensions.Caching.Memory from 6.0.1 to 7.0.0 by @dependabot in #1366
- Bump Microsoft.NET.Test.Sdk from 17.3.2 to 17.4.0 by @dependabot in #1367
- Bump HIC.RDMP.Plugin from 8.0.5 to 8.0.6 by @dependabot in #1369
- Bump HIC.RDMP.Plugin.Test from 8.0.5 to 8.0.6 by @dependabot in #1368
- Release v5.3.0 by @rkm in #1370
Full Changelog: v5.2.0...v5.3.0