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[ORCA-294] Fix tox implementation in CI pipeline #31

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merged 4 commits into from
Dec 15, 2023
Merged

[ORCA-294] Fix tox implementation in CI pipeline #31

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4a78c55
use tox-gh
BWMac Dec 13, 2023
560d011
removes tox as dependency
BWMac Dec 13, 2023
913e96e
pin airflow version
BWMac Dec 13, 2023
3eb5983
only support 3.10, 3.11
BWMac Dec 14, 2023
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15 changes: 10 additions & 5 deletions .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -36,8 +36,10 @@ jobs:
with: {python-version: "3.11"}
- name: Run static analysis and format checkers
run: pipx run pre-commit run --all-files --show-diff-on-failure
- name: Install tox-gh plugin
run: python -m pip install tox-gh>=1.2
- name: Build package distribution files
run: pipx run --spec 'tox~=3.0' tox -e clean,build
run: tox -e clean,build
- name: Record the paths of wheel and source tarball distributions
id: distribution-paths
run: |
Expand All @@ -64,7 +66,7 @@ jobs:
strategy:
matrix:
python:
- "3.8"
- "3.10" # oldest Python supported
- "3.11" # newest Python that is stable
platform:
- ubuntu-latest
Expand All @@ -80,16 +82,19 @@ jobs:
python-version: ${{ matrix.python }}
- uses: actions/download-artifact@v3
with: {name: python-distribution-files, path: dist/}
- name: Install tox-gh plugin
run: python -m pip install tox-gh>=1.2
- name: Setup test suite
run: tox -vv --notest
- name: Run tests
env:
# New variables should match a `passenv` pattern under `[testenv]` in tox.ini
SEVENBRIDGES_CONNECTION_URI: ${{ secrets.SEVENBRIDGES_CONNECTION_URI }}
NEXTFLOWTOWER_CONNECTION_URI: ${{ secrets.NEXTFLOWTOWER_CONNECTION_URI }}
SYNAPSE_CONNECTION_URI: ${{ secrets.SYNAPSE_CONNECTION_URI }}
run: >-
pipx run --spec 'tox~=3.0' tox
--installpkg '${{ needs.prepare.outputs.wheel-path }}'
-- -rFEx --durations 10 --color yes
tox --installpkg '${{ needs.prepare.outputs.wheel-path }}'
-- -rFEx --durations 10 --color yes
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v3
with:
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2 changes: 1 addition & 1 deletion .readthedocs.yml
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Expand Up @@ -17,7 +17,7 @@ formats:
- pdf

python:
version: 3.8
version: 3.10
install:
- requirements: docs/requirements.txt
- {path: ., method: pip}
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