Feature: filenameExists Validation Rule
#4458
Workflow file for this run
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| # Built from: | |
| # https://docs.github.com/en/actions/guides/building-and-testing-python | |
| # https://github.com/Sage-Bionetworks/challengeutils/blob/master/.github/workflows/pythonapp.yml | |
| # https://github.com/snok/install-poetry#workflows-and-tips | |
| name: Test schematic | |
| on: | |
| push: | |
| branches: ['main'] | |
| pull_request: | |
| branches: ['*'] | |
| workflow_dispatch: # Allow manually triggering the workflow | |
| concurrency: | |
| # cancel the current running workflow from the same branch, PR when a new workflow is triggered | |
| # when the trigger is not a PR but a push, it will use the commit sha to generate the concurrency group | |
| # {{ github.workflow }}: the workflow name is used to generate the concurrency group. This allows you to have more than one workflows | |
| # {{ github.ref_type }}: the type of Git ref object created in the repository. Can be either branch or tag | |
| # {{ github.event.pull_request.number}}: get PR number | |
| # {{ github.sha }}: full commit sha | |
| # credit: https://github.com/Sage-Bionetworks-Workflows/sagetasks/blob/main/.github/workflows/ci.yml | |
| group: >- | |
| ${{ github.workflow }}-${{ github.ref_type }}- | |
| ${{ github.event.pull_request.number || github.sha }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| runs-on: ubuntu-22.04-4core-16GBRAM-150GBSSD | |
| env: | |
| POETRY_VERSION: 1.3.0 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10"] | |
| steps: | |
| #---------------------------------------------- | |
| # check-out repo and set-up python | |
| #---------------------------------------------- | |
| - name: Check out repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| #---------------------------------------------- | |
| # install & configure poetry | |
| #---------------------------------------------- | |
| - name: Install Poetry | |
| run: | | |
| curl -sSL https://install.python-poetry.org \ | |
| | python3 - --version ${{ env.POETRY_VERSION }}; | |
| poetry config virtualenvs.create true; | |
| poetry config virtualenvs.in-project true; | |
| #---------------------------------------------- | |
| # load cached venv if cache exists | |
| #---------------------------------------------- | |
| - name: Load cached venv | |
| id: cached-poetry-dependencies | |
| uses: actions/cache@v2 | |
| with: | |
| path: .venv | |
| key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }} | |
| #---------------------------------------------- | |
| # install dependencies and root project | |
| #---------------------------------------------- | |
| - name: Install dependencies and root project | |
| if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' | |
| run: poetry install --no-interaction --all-extras | |
| #---------------------------------------------- | |
| # perform linting | |
| #---------------------------------------------- | |
| # Disabled until we agree to turn it on | |
| # - name: Lint with flake8 | |
| # run: | | |
| # # stop the build if there are Python syntax errors or undefined names | |
| # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| #---------------------------------------------- | |
| # check formatting | |
| #---------------------------------------------- | |
| - name: Code formatting with black | |
| run: | | |
| # ran only on certain files for now | |
| # add here when checked | |
| poetry run black schematic tests schematic_api --check | |
| #---------------------------------------------- | |
| # type checking/enforcement | |
| #---------------------------------------------- | |
| - name: Type checking with mypy | |
| run: | | |
| # ran only on certain files for now | |
| # add here when checked | |
| # poetry run mypy --install-types --non-interactive | |
| # add here when enforced | |
| poetry run mypy --disallow-untyped-defs --install-types --non-interactive schematic/schemas/ schematic/configuration/ schematic/exceptions.py schematic/help.py schematic/loader.py schematic/version.py schematic/visualization schematic/utils/ | |
| #---------------------------------------------- | |
| # linting | |
| #---------------------------------------------- | |
| - name: Lint with pylint | |
| run: | | |
| # ran only on certain files for now | |
| # add here when checked | |
| poetry run pylint schematic/visualization/* schematic/configuration/*.py schematic/exceptions.py schematic/help.py schematic/loader.py schematic/version.py schematic/utils/*.py schematic/schemas/*.py | |
| #---------------------------------------------- | |
| # run test suite | |
| #---------------------------------------------- | |
| - name: Run tests | |
| env: | |
| SYNAPSE_ACCESS_TOKEN: ${{ secrets.SYNAPSE_ACCESS_TOKEN }} | |
| SERVICE_ACCOUNT_CREDS: ${{ secrets.SERVICE_ACCOUNT_CREDS }} | |
| run: > | |
| source .venv/bin/activate; | |
| pytest --durations=0 --cov-report=term --cov-report=html:htmlcov --cov=schematic/ | |
| -m "not (schematic_api or table_operations)" --reruns 2 -n auto | |
| - name: Upload pytest test results | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: pytest-results-${{ matrix.python-version }} | |
| path: htmlcov | |
| # Use always() to always run this step to publish test results when there are test failures | |
| if: ${{ always() }} |