Merge pull request #1402 from Sage-Bionetworks/develop-FDS-1947-json-…

…schema-bug Convert nans in manifest to empty strings just prior to JSON Schema Validation
Sage-Bionetworks · Apr 11, 2024 · 46572cf · 46572cf
2 parents 77fbaf7 + a332b6f
commit 46572cf
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/schematic/models/validate_manifest.py b/schematic/models/validate_manifest.py
@@ -292,6 +292,9 @@ def validate_manifest_values(
         warnings = []
         col_attr = {}  # save the mapping between column index and attribute name
 
+        # Replace nans with empty strings so jsonschema
+        manifest = manifest.replace({np.nan: ""})
+
         # numerical values need to be type string for the jsonValidator
         for col in manifest.select_dtypes(
             include=[int, np.int64, float, np.float64]