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Raise a helpful error when a datatype cannot be found in a schema #1302

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merged 1 commit into from
Sep 22, 2023

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GiaJordan
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@GiaJordan GiaJordan commented Sep 22, 2023

For the linked issue, the error arose because the data type was not spelled according to the conventions of the class label in the schema. The error raised by networkx: return self._nodes[n] \ KeyError: 'AssayRNASeqMetadataTemplate' was not very good at communicating what was going wrong. I've wrapped another error around this message for the case of generating a manifest that should be more explanatory and offers suggestions for remedying.

Re-merge of the reverted PR #1286 (was reverted not due to issues but to allow for re-releasing a failed release without any other changes)

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Approving since its just adding back a reverted change.

@GiaJordan GiaJordan merged commit 9780ac4 into develop Sep 22, 2023
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@GiaJordan GiaJordan deleted the develop-node-error-FDS-955 branch September 22, 2023 17:56
@GiaJordan GiaJordan mentioned this pull request Oct 17, 2023
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2 participants