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Schapiro Lab

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  1. histoCAT histoCAT Public

    Histology Topography Cytometry Analysis Toolbox

    MATLAB 66 23

  2. micronuclAI micronuclAI Public

    Automated identification of micronuclei for chromosomal instability (CIN) quantification.

    Python 7 1

  3. Background_subtraction Background_subtraction Public

    Background subtraction for COMET platform

    Python 6 3

  4. macsima2mc macsima2mc Public

    utitilies for macsima image sets

    Python 3 1

  5. mi_spatialomics mi_spatialomics Public

    Data analysis for “Spatial omics of acute myocardial infarction reveals a novel mode of immune cell infiltration”

    Jupyter Notebook 2 1

  6. Segmentation_prep Segmentation_prep Public

    Image preprocessing for different segmentation approaches.

    Python 2

Repositories

Showing 10 of 38 repositories
  • mi_spatialomics_minerva_story_d1 Public

    This repository contains the Minerva story for a 1 day post-MI sample attached to the Spatial multi-omics of myocardial infarction manuscript.

    SchapiroLabor/mi_spatialomics_minerva_story_d1’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Nov 13, 2024
  • macsima2mc Public

    utitilies for macsima image sets

    SchapiroLabor/macsima2mc’s past year of commit activity
    Python 3 BSD-3-Clause 1 3 0 Updated Nov 11, 2024
  • macsima_pipeline Public
    SchapiroLabor/macsima_pipeline’s past year of commit activity
    Shell 0 0 0 0 Updated Nov 6, 2024
  • micronuclAI Public

    Automated identification of micronuclei for chromosomal instability (CIN) quantification.

    SchapiroLabor/micronuclAI’s past year of commit activity
    Python 7 AGPL-3.0 1 0 0 Updated Oct 15, 2024
  • mi_spatialomics Public

    Data analysis for “Spatial omics of acute myocardial infarction reveals a novel mode of immune cell infiltration”

    SchapiroLabor/mi_spatialomics’s past year of commit activity
    Jupyter Notebook 2 MIT 1 3 1 Updated Oct 9, 2024
  • Segmentation_prep Public

    Image preprocessing for different segmentation approaches.

    SchapiroLabor/Segmentation_prep’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Sep 17, 2024
  • nf-core-test-datasets Public Forked from nf-core/test-datasets

    Test data to be used for automated testing with nf-core pipelines hosted on SchapiroLabor

    SchapiroLabor/nf-core-test-datasets’s past year of commit activity
    0 MIT 353 0 0 Updated Sep 7, 2024
  • mcmicro Public Forked from labsyspharm/mcmicro

    Multiple-choice microscopy pipeline

    SchapiroLabor/mcmicro’s past year of commit activity
    Nextflow 0 MIT 59 0 0 Updated Sep 6, 2024
  • projectionpursuit Public Forked from cellsignal/projectionpursuit

    projection pursuit clustering

    SchapiroLabor/projectionpursuit’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Aug 28, 2024
  • phenoimager2mc Public

    Formatting tif/ome-tif metadata for MCMICRO staging modules

    SchapiroLabor/phenoimager2mc’s past year of commit activity
    Jupyter Notebook 0 AGPL-3.0 0 0 0 Updated Aug 9, 2024
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