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Annoying whitespace
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ewels committed Apr 10, 2017
1 parent 1e8c0dd commit d9a822d
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -596,7 +596,7 @@ process rseqc {
} else if (params.reverse_stranded && !params.unstranded){
strandRule = single ? '-d +-,-+' : '-d 1+-,1-+,2++,2--'
}
"""
"""
samtools index $bam_rseqc
infer_experiment.py -i $bam_rseqc -r $bed12 > ${bam_rseqc.baseName}.infer_experiment.txt
RPKM_saturation.py -i $bam_rseqc -r $bed12 $strandRule -o ${bam_rseqc.baseName}.RPKM_saturation
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