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valyo committed Nov 22, 2023
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2 changes: 1 addition & 1 deletion .buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: a385cda67b2f95d73e229f7bc8d9a040
config: 12a57145c5946ca39c650bde58a991c8
tags: d77d1c0d9ca2f4c8421862c7c5a0d620
174 changes: 87 additions & 87 deletions _images/dds-help-2.svg
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103 changes: 51 additions & 52 deletions _images/dds-project-status-help.svg
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24 changes: 12 additions & 12 deletions _images/dds-version.svg
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2 changes: 1 addition & 1 deletion auth/index.html
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Expand Up @@ -141,7 +141,7 @@ <h3>deactivate<a class="headerlink" href="#dds-auth-twofactor-deactivate" title=



<p class="blurb">Version: 2.5.2</p>
<p class="blurb">Version: 2.6.0</p>



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60 changes: 33 additions & 27 deletions changelog/index.html
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<section id="changelog">
<h1>Changelog<a class="headerlink" href="#changelog" title="Permalink to this headline"></a></h1>
<section id="id1">
<span id="id2"></span><h2>2.5.2 - 2023-10-25<a class="headerlink" href="#id1" title="Permalink to this headline"></a></h2>
<span id="id2"></span><h2>2.6.0 - 2023-10-25<a class="headerlink" href="#id1" title="Permalink to this headline"></a></h2>
<ul class="simple">
<li><p><cite>dds data put</cite> updated: If files uploaded successfully, but there are issues with saving the info to the database, the system performs a final bulk attempt.</p></li>
</ul>
</section>
<section id="id3">
<span id="id4"></span><h2>2.5.2 - 2023-10-25<a class="headerlink" href="#id3" title="Permalink to this headline"></a></h2>
<ul class="simple">
<li><p>Updated command: <cite>dds project status delete/archive</cite> now prints project information and asks for confirmation from user.</p></li>
<li><p>“Checksum verification successful” is not printed when file integrity is verified (unless <cite>-v</cite> option is used); Only prints if there is an error.</p></li>
<li><p>New command <cite>dds project status extend</cite>: Unit Admins / Personnel can extend the project deadline prior to the project expiring.</p></li>
</ul>
</section>
<section id="id3">
<span id="id4"></span><h2>2.5.1 - 2023-09-25<a class="headerlink" href="#id3" title="Permalink to this headline"></a></h2>
<section id="id5">
<span id="id6"></span><h2>2.5.1 - 2023-09-25<a class="headerlink" href="#id5" title="Permalink to this headline"></a></h2>
<ul class="simple">
<li><dl class="simple">
<dt>Super Admins only:</dt><dd><ul>
Expand All @@ -73,8 +79,8 @@ <h1>Changelog<a class="headerlink" href="#changelog" title="Permalink to this he
</li>
</ul>
</section>
<section id="id5">
<span id="id6"></span><h2>2.5.0 - 2023-08-29<a class="headerlink" href="#id5" title="Permalink to this headline"></a></h2>
<section id="id7">
<span id="id8"></span><h2>2.5.0 - 2023-08-29<a class="headerlink" href="#id7" title="Permalink to this headline"></a></h2>
<ul class="simple">
<li><dl class="simple">
<dt>Dependencies:</dt><dd><ul>
Expand All @@ -95,14 +101,14 @@ <h1>Changelog<a class="headerlink" href="#changelog" title="Permalink to this he
<li><p><strong>BACKWARDS INCOMPATIBLE (will return 404):</strong> New option in command <cite>dds user ls</cite>: <cite>–save-emails</cite>. Only available to Super Admins to allow them to easily email users with account roles ‘Unit Admin’ and ‘Unit Personnel’.</p></li>
</ul>
</section>
<section id="id7">
<span id="id8"></span><h2>2.2.65 - 2023-05-26<a class="headerlink" href="#id7" title="Permalink to this headline"></a></h2>
<section id="id9">
<span id="id10"></span><h2>2.2.65 - 2023-05-26<a class="headerlink" href="#id9" title="Permalink to this headline"></a></h2>
<ul class="simple">
<li><p>New URL for the testing instance: <a class="reference external" href="https://dds-dev.dckube3.scilifelab.se/api/v1">https://dds-dev.dckube3.scilifelab.se/api/v1</a></p></li>
</ul>
</section>
<section id="id9">
<span id="id10"></span><h2>2.2.64 - 2023-04-26<a class="headerlink" href="#id9" title="Permalink to this headline"></a></h2>
<section id="id11">
<span id="id12"></span><h2>2.2.64 - 2023-04-26<a class="headerlink" href="#id11" title="Permalink to this headline"></a></h2>
<ul class="simple">
<li><p>New command for checking a few statistics in the DDS.</p></li>
<li><p>Removed debug-level logging.</p></li>
Expand All @@ -116,8 +122,8 @@ <h1>Changelog<a class="headerlink" href="#changelog" title="Permalink to this he
</li>
</ul>
</section>
<section id="id11">
<span id="id12"></span><h2>2.2.63 - 2023-03-13<a class="headerlink" href="#id11" title="Permalink to this headline"></a></h2>
<section id="id13">
<span id="id14"></span><h2>2.2.63 - 2023-03-13<a class="headerlink" href="#id13" title="Permalink to this headline"></a></h2>
<ul class="simple">
<li><p>Added this version changelog to the documentation.</p></li>
<li><p>Reduced debug-level logging.</p></li>
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<li><p>Clarified error / warning messages printed out after upload issues: The <code class="docutils literal notranslate"><span class="pre">dds_failed_delivery.json</span></code> file should not be deleted.</p></li>
</ul>
</section>
<section id="id13">
<span id="id14"></span><h2>2.2.62 - 2023-02-10<a class="headerlink" href="#id13" title="Permalink to this headline"></a></h2>
<section id="id15">
<span id="id16"></span><h2>2.2.62 - 2023-02-10<a class="headerlink" href="#id15" title="Permalink to this headline"></a></h2>
<ul class="simple">
<li><p>Fixed an error in generation of executable for Windows.</p></li>
</ul>
</section>
<section id="id15">
<span id="id16"></span><h2>2.2.61 - 2023-02-10<a class="headerlink" href="#id15" title="Permalink to this headline"></a></h2>
<section id="id17">
<span id="id18"></span><h2>2.2.61 - 2023-02-10<a class="headerlink" href="#id17" title="Permalink to this headline"></a></h2>
<ul class="simple">
<li><p>New executable for Ubuntu 20.04. Latest Ubuntu is 22.04.</p></li>
<li><p>Updated security scanning.</p></li>
</ul>
</section>
<section id="id17">
<span id="id18"></span><h2>2.2.6 - 2023-02-01<a class="headerlink" href="#id17" title="Permalink to this headline"></a></h2>
<section id="id19">
<span id="id20"></span><h2>2.2.6 - 2023-02-01<a class="headerlink" href="#id19" title="Permalink to this headline"></a></h2>
<ul class="simple">
<li><p>Add security scanning of code.</p></li>
<li><p>Publish CLI to TestPyPi during development: <a class="reference external" href="https://test.pypi.org/project/dds-cli/">dds-cli</a></p></li>
<li><p>Added <a class="reference external" href="https://scilifelabdatacentre.github.io/dds_cli/testing/">new instructions</a> for testing instance of the DDS.</p></li>
</ul>
</section>
<section id="id19">
<span id="id20"></span><h2>2.2.5 - 2023-01-05<a class="headerlink" href="#id19" title="Permalink to this headline"></a></h2>
<section id="id21">
<span id="id22"></span><h2>2.2.5 - 2023-01-05<a class="headerlink" href="#id21" title="Permalink to this headline"></a></h2>
<ul class="simple">
<li><p>Updated documentation and added examples.</p></li>
</ul>
</section>
<section id="id21">
<span id="id22"></span><h2>2.2.4 - 2022-12-15<a class="headerlink" href="#id21" title="Permalink to this headline"></a></h2>
<section id="id23">
<span id="id24"></span><h2>2.2.4 - 2022-12-15<a class="headerlink" href="#id23" title="Permalink to this headline"></a></h2>
<ul class="simple">
<li><p><strong>Vulnerability:</strong> <code class="docutils literal notranslate"><span class="pre">jwcrypto</span></code> bumped from <code class="docutils literal notranslate"><span class="pre">1.4</span></code> to <code class="docutils literal notranslate"><span class="pre">1.4.2</span></code></p></li>
<li><p>Changed command: <code class="docutils literal notranslate"><span class="pre">dds</span> <span class="pre">project</span> <span class="pre">info</span></code> to <code class="docutils literal notranslate"><span class="pre">dds</span> <span class="pre">project</span> <span class="pre">info</span> <span class="pre">display</span></code></p></li>
<li><p>New command to allow changes to project title, description and PI: <code class="docutils literal notranslate"><span class="pre">dds</span> <span class="pre">project</span> <span class="pre">info</span> <span class="pre">change</span></code>.</p></li>
</ul>
</section>
<section id="id23">
<span id="id24"></span><h2>2.2.3 - 2022-11-29<a class="headerlink" href="#id23" title="Permalink to this headline"></a></h2>
<section id="id25">
<span id="id26"></span><h2>2.2.3 - 2022-11-29<a class="headerlink" href="#id25" title="Permalink to this headline"></a></h2>
<ul class="simple">
<li><p>Fixed bug (Windows): Backslashes were causing issues with listing and downloading project contents.</p></li>
</ul>
</section>
<section id="id25">
<span id="id26"></span><h2>2.2.2 - 2022-11-17<a class="headerlink" href="#id25" title="Permalink to this headline"></a></h2>
<section id="id27">
<span id="id28"></span><h2>2.2.2 - 2022-11-17<a class="headerlink" href="#id27" title="Permalink to this headline"></a></h2>
<ul class="simple">
<li><p>New <code class="docutils literal notranslate"><span class="pre">--destination</span></code> option for upload command: <code class="docutils literal notranslate"><span class="pre">dds</span> <span class="pre">data</span> <span class="pre">put</span> <span class="pre">--destination</span> <span class="pre">[destination]</span></code> will upload data to remote directory called “[destination]”</p></li>
<li><p>New command for displaying project information: <code class="docutils literal notranslate"><span class="pre">dds</span> <span class="pre">project</span> <span class="pre">info</span></code></p></li>
Expand All @@ -186,7 +192,7 @@ <h1>Changelog<a class="headerlink" href="#changelog" title="Permalink to this he
</ul>
</section>
<section id="earlier-versions">
<span id="id27"></span><h2>Earlier versions<a class="headerlink" href="#earlier-versions" title="Permalink to this headline"></a></h2>
<span id="id29"></span><h2>Earlier versions<a class="headerlink" href="#earlier-versions" title="Permalink to this headline"></a></h2>
<p>Please see <a class="reference external" href="https://github.com/ScilifelabDataCentre/dds_cli/releases">the release page on GitHub</a> for detailed information about the changes in each release.</p>
</section>
</section>
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<p class="blurb">Version: 2.5.2</p>
<p class="blurb">Version: 2.6.0</p>



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Expand Up @@ -354,7 +354,7 @@ <h2>rm<a class="headerlink" href="#dds-data-rm" title="Permalink to this headlin



<p class="blurb">Version: 2.5.2</p>
<p class="blurb">Version: 2.6.0</p>



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<p class="blurb">Version: 2.5.2</p>
<p class="blurb">Version: 2.6.0</p>



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<p class="blurb">Version: 2.5.2</p>
<p class="blurb">Version: 2.6.0</p>



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Expand Up @@ -246,7 +246,7 @@ <h2><a class="toc-backref" href="#id12">Indices and tables</a><a class="headerli



<p class="blurb">Version: 2.5.2</p>
<p class="blurb">Version: 2.6.0</p>



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Expand Up @@ -344,7 +344,7 @@ <h1>Installation guide<a class="headerlink" href="#installation-guide" title="Pe



<p class="blurb">Version: 2.5.2</p>
<p class="blurb">Version: 2.6.0</p>



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<p class="blurb">Version: 2.5.2</p>
<p class="blurb">Version: 2.6.0</p>



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<p class="blurb">Version: 2.5.2</p>
<p class="blurb">Version: 2.6.0</p>



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<p class="blurb">Version: 2.5.2</p>
<p class="blurb">Version: 2.6.0</p>



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Expand Up @@ -140,7 +140,7 @@ <h2>What happens if I forget my DDS password?<a class="headerlink" href="#what-h



<p class="blurb">Version: 2.5.2</p>
<p class="blurb">Version: 2.6.0</p>



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