Merge pull request #313 from Steinbeck-Lab/development

Development
Steinbeck-Lab · Aug 7, 2023 · 2c5be18 · 2c5be18
2 parents c0c5447 + d17b410
commit 2c5be18
Showing 1 changed file with 12 additions and 3 deletions.
diff --git a/.github/workflows/dev-build.yml b/.github/workflows/dev-build.yml
@@ -36,13 +36,22 @@ jobs:
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
+        pip3 install --upgrade setuptools pip
+        pip3 install --no-cache-dir -r requirements.txt
+        pip3 install rdkit
+        python3 -m pip uninstall -y imantics
+        pip3 install imantics==0.1.12
+        pip3 install openbabel-wheel
+        pip3 install --no-deps decimer-segmentation
+        pip3 install --no-deps decimer>=2.2.0
+        pip3 install --no-deps STOUT-pypi>=2.0.5
         pip install flake8 pytest
     - name: Analysing the code with pylint
       run: |
         flake8 --per-file-ignores="__init__.py:F401" --ignore E402,E501,W503 $(git ls-files '*.py') .
-    # - name: Run test
-    #   run: |
-    #     pytest -p no:warnings
+    - name: Run test
+      run: |
+        python3 -m pytest -p no:warnings
 
   push_to_registry:
     name: Push Docker image to Docker Hub