[Run test] accrualPlot #16
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| on: | |
| issues: | |
| types: [opened, edited] | |
| name: Reply to issues | |
| permissions: | |
| issues: write | |
| contents: write | |
| jobs: | |
| render: | |
| name: Reply to issue | |
| runs-on: macOS-latest | |
| env: | |
| NUMBER: ${{ github.event.issue.number }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| # - uses: managedkaos/[email protected] | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| id: setupR | |
| if: startsWith(github.event.issue.title, '[Package validation]') || startsWith(github.event.issue.title, '[Package test]') | |
| - name: Install dependencies | |
| run: Rscript -e 'install.packages(c("jsonlite", "cranlogs", "crayon", "dplyr", "glue", "lubridate", "sessioninfo", "testthat", "rmarkdown", "knitr", "kableExtra", "magrittr", "devtools", "readr", "tidyr", "pkgsearch"))' | |
| if: steps.setupR.outcome == 'success' | |
| - name: Install validation | |
| run: Rscript -e 'install.packages("validation", repos = "https://ctu-bern.r-universe.dev", dependencies = TRUE)' | |
| if: steps.setupR.outcome == 'success' | |
| - name: Run script to calculate risk and post comment | |
| if: startsWith(github.event.issue.title, '[Package validation]') | |
| id: pkgrisk | |
| run: Rscript -e 'source("resources/reply_pkg_validation_issue.R")' | |
| - name: commit updated validation CSV | |
| if: steps.pkgrisk.outcome == 'success' | |
| run: | | |
| git add tables/validated_packages.csv | |
| git commit -m "add new packages" || echo "No changes to commit" | |
| git push origin main || echo "No changes to commit" | |
| - name: Run script to calculate risk and post comment | |
| if: startsWith(github.event.issue.title, '[Package test]') | |
| id: pkgtest | |
| run: Rscript -e 'source("resources/reply_test_issue.R")' | |
| - name: commit updated tests CSV | |
| if: steps.pkgtest.outcome == 'success' | |
| run: | | |
| git add tables/package_tests.csv | |
| git commit -m "add new tests" || echo "No changes to commit" | |
| git push origin main || echo "No changes to commit" | |
| test_r_package: | |
| runs-on: ${{ matrix.config.os }} | |
| if: startsWith(github.event.issue.title, '[Run test]') | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| # - {os: macos-latest, r: 'devel'} | |
| - {os: macos-latest, r: 'release'} | |
| # - {os: macos-latest, r: 'oldrel'} | |
| # - {os: macos-latest, r: 'oldrel-1'} | |
| # - {os: macos-13, r: 'devel'} | |
| - {os: macos-13, r: 'release'} | |
| # - {os: macos-13, r: 'oldrel'} | |
| # - {os: macos-13, r: 'oldrel-1'} | |
| # - {os: windows-latest, r: 'devel'} | |
| - {os: windows-latest, r: 'release'} | |
| # - {os: windows-latest, r: 'oldrel'} | |
| # - {os: windows-latest, r: 'oldrel-1'} | |
| # - {os: windows-2019, r: 'devel'} | |
| - {os: windows-2019, r: 'release'} | |
| # - {os: windows-2019, r: 'oldrel'} | |
| # - {os: windows-2019, r: 'oldrel-1'} | |
| # - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| # - {os: ubuntu-latest, r: 'oldrel'} | |
| # - {os: ubuntu-latest, r: 'oldrel-1'} | |
| # - {os: ubuntu-20.04, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-20.04, r: 'release'} | |
| # - {os: ubuntu-20.04, r: 'oldrel'} | |
| # - {os: ubuntu-20.04, r: 'oldrel-1'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| NUMBER: ${{ github.event.issue.number }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - name: Install dependencies | |
| run: Rscript -e 'install.packages(c("jsonlite", "cranlogs", "crayon", "dplyr", "glue", "lubridate", "sessioninfo", "testthat", "rmarkdown", "knitr", "kableExtra", "magrittr", "devtools", "readr", "tidyr", "pkgsearch"))' | |
| - name: Install validation | |
| run: Rscript -e 'install.packages("validation", repos = "https://ctu-bern.r-universe.dev", dependencies = TRUE)' | |
| - name: Run script to test package | |
| id: pkgtest | |
| run: Rscript -e 'source("resources/test_pkg.R")' | |
| - name: commit updated tests CSV | |
| if: steps.pkgtest.outcome == 'success' | |
| run: | | |
| git add tables/package_tests.csv | |
| git commit -m "add new tests" || echo "No changes to commit" | |
| git push origin main || echo "No changes to commit" | |
| update_tab: | |
| name: update test table | |
| runs-on: macOS-latest | |
| needs: [test_r_package] | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| # - uses: managedkaos/[email protected] | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - name: Install dependencies | |
| run: Rscript -e 'install.packages(c("jsonlite", "cranlogs", "crayon", "dplyr", "glue", "lubridate", "sessioninfo", "testthat", "rmarkdown", "knitr", "kableExtra", "magrittr", "devtools", "readr", "tidyr", "pkgsearch"))' | |
| - name: Install validation | |
| run: Rscript -e 'install.packages("validation", repos = "https://ctu-bern.r-universe.dev", dependencies = TRUE)' | |
| - name: Run script to calculate risk and post comment | |
| id: pkgtest | |
| run: Rscript -e 'source("resources/update_tests_table.R")' | |
| - name: commit updated tests CSV | |
| if: steps.pkgtest.outcome == 'success' | |
| run: | | |
| git add tables/package_tests.csv | |
| git commit -m "add new tests" || echo "No changes to commit" | |
| git push origin main || echo "No changes to commit" |