v0.2.1

Nature Protocol submission:

Changeset with respect to v0.2:

• Updated README
• Minor bug fixes
• Updated package versions in conda_env.yml
  • Python 3.8
  • R 4.0
• Visualisation:
  • Added row filtering to PCA computation (in addition to the already present column filtering)
  • Now using ggplot2 to modify the non-interactive PCA plots

Release of v0.2

Changeset:

• Major structural overhaul.
• Conda environment setup using conda_env.yml.
  • Troubleshoot run errors via dependency_troubleshoot.py.
• Optional scripts (opt-) in code/utils now also working working.
• Addition of FCS support and an optional script for TXT<->FCS conversion.
• Addition of ComplexHeatmaps supporting clustering of rows and columns.

Release of v0.2-beta

Changeset:

• Major structural overhaul.
• Conda environment setup using conda_env.yml.
  • Troubleshoot run errors via dependency_troubleshoot.py.
• Optional scripts (opt-) in code/utils now also working working.
• Addition of FCS support and an optional script for TXT<->FCS conversion.
• Addition of ComplexHeatmaps supporting clustering of rows and columns.

Bugs:

• Numbered scripts in code/utils NOT FULLY TESTED.

Pre-release of v0.2-alpha

Initial submission to Nat. Protocols

Changeset:

• Major structural overhaul.
• Conda environment file.
• Addition of FCS support.

Bugs:

• Auxiliary scripts NOT FULLY TESTED.

Pre-release version

Initial pre-release version