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Update function.index.csv
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@TGuillerme
TGuillerme committed Nov 27, 2023
1 parent eb908a7 commit 094c729
Showing 1 changed file with 121 additions and 108 deletions.
229 changes: 121 additions & 108 deletions function.index.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,7 @@ as.covar.R,170,fun.covar
as.covar_fun.R,2,eval.covar
bhatt.coeff.R,28,bhatt.coeff
boot.matrix.R,90,boot.matrix
boot.matrix.R,218,add.prob
boot.matrix.R,247,add.prob
boot.matrix_fun.R,2,elements.sampler
boot.matrix_fun.R,4,sampler
boot.matrix_fun.R,20,boot.null
Expand All @@ -61,10 +61,10 @@ char.diff_fun.R,56,binary
char.diff_fun.R,61,convert.bitwise
check.morpho.R,52,check.morpho
chrono.subsets.R,98,chrono.subsets
chrono.subsets.R,150,stretch.tree
chrono.subsets.R,310,reverse.time
chrono.subsets.R,353,make.fadlad
chrono.subsets.R,433,combine.args
chrono.subsets.R,205,stretch.tree
chrono.subsets.R,356,reverse.time
chrono.subsets.R,399,make.fadlad
chrono.subsets.R,475,combine.args
chrono.subsets_fun.R,2,get.percent.age
chrono.subsets_fun.R,18,adjust.age
chrono.subsets_fun.R,24,adjust.FADLAD
Expand Down Expand Up @@ -108,93 +108,99 @@ custom.subsets_fun.R,40,set.group.list
custom.subsets_fun.R,69,check.elements
custom.subsets_fun.R,118,check.group.list
dispRity.R,126,dispRity
dispRity.R,220,dispRity.int.call
dispRity.covar.projections.R,73,dispRity.covar.projections
dispRity.covar.projections.R,174,get.call
dispRity.covar.projections.R,236,get.call
dispRity.covar.projections_fun.R,2,projections.fast
dispRity.covar.projections_fun.R,69,fun.proj
dispRity.covar.projections_fun.R,74,apply.proj
dispRity.fast.R,33,dispRity.fast
dispRity.metric.R,361,dimension.level3.fun
dispRity.metric.R,366,dimension.level2.fun
dispRity.metric.R,385,dimension.level1.fun
dispRity.metric.R,398,between.groups.fun
dispRity.metric.R,407,k.root
dispRity.metric.R,413,variances
dispRity.metric.R,422,ranges
dispRity.metric.R,431,quantiles
dispRity.metric.R,440,fun.dist.euclidean
dispRity.metric.R,445,fun.dist.manhattan
dispRity.metric.R,451,select.method
dispRity.metric.R,466,centroids
dispRity.metric.R,485,displacements
dispRity.metric.R,491,neighbours
dispRity.metric.R,501,mode.val
dispRity.metric.R,507,ellipse.volume
dispRity.metric.R,544,convhull.surface
dispRity.metric.R,550,convhull.volume
dispRity.metric.R,556,diagonal
dispRity.metric.R,562,get.ancestor.dist
dispRity.metric.R,568,get.root.dist
dispRity.metric.R,572,ancestral.dist
dispRity.metric.R,583,span.tree.length
dispRity.metric.R,591,pairwise.dist
dispRity.metric.R,599,radius
dispRity.metric.R,608,n.ball.volume
dispRity.metric.R,624,func.eve
dispRity.metric.R,640,func.div
dispRity.metric.R,652,get.slope.significant
dispRity.metric.R,656,get.slope.nonsignificant
dispRity.metric.R,661,angles
dispRity.metric.R,699,deviations
dispRity.metric.R,742,distance
dispRity.metric.R,752,edge.length.tree
dispRity.metric.R,765,centre.matrix
dispRity.metric.R,770,get.proj.length
dispRity.metric.R,775,quantiles.per.groups
dispRity.metric.R,780,group.dist
dispRity.metric.R,810,point.dist
dispRity.metric.R,822,vector.angle
dispRity.metric.R,827,get.rotation.matrix
dispRity.metric.R,842,orthogonise
dispRity.metric.R,861,linear.algebra.projection
dispRity.metric.R,917,correct.position
dispRity.metric.R,930,get.distance
dispRity.metric.R,936,projections
dispRity.metric.R,978,projections.between
dispRity.metric.R,1003,disalignment
dispRity.metric.R,1023,get.root
dispRity.metric.R,1027,get.ancestor
dispRity.metric.R,1039,get.tips
dispRity.metric.R,1043,get.nodes
dispRity.metric.R,1047,get.livings
dispRity.metric.R,1052,get.fossils
dispRity.metric.R,1057,sapply.projections
dispRity.metric.R,1063,projections.tree
dispRity.metric.R,1091,from_to[[i]]
dispRity.multi.R,26,dispRity.multi.split
dispRity.multi.R,36,dispRity.multi.apply
dispRity.multi.R,41,dispRity.multi.split
dispRity.utilities.R,31,make.dispRity
dispRity.utilities.R,74,fill.dispRity
dispRity.utilities.R,149,get.matrix
dispRity.utilities.R,169,get.disparity
dispRity.utilities.R,214,lapply.observed
dispRity.utilities.R,238,matrix.dispRity
dispRity.utilities.R,242,extract.dispRity
dispRity.utilities.R,313,get.subsets
dispRity.utilities.R,335,combine.subsets
dispRity.utilities.R,338,select.elements
dispRity.utilities.R,445,size.subsets
dispRity.utilities.R,449,n.subsets
dispRity.utilities.R,453,name.subsets
dispRity.utilities.R,517,add.tree
dispRity.utilities.R,532,get.tree
dispRity.utilities.R,577,remove.tree
dispRity.utilities.R,628,rescale.dispRity
dispRity.utilities.R,665,lapply.scale
dispRity.utilities.R,715,sort.dispRity
dispRity.utilities.R,801,extinction.subsets
dispRity.metric.R,371,dimension.level3.fun
dispRity.metric.R,376,dimension.level2.fun
dispRity.metric.R,395,dimension.level1.fun
dispRity.metric.R,409,between.groups.fun
dispRity.metric.R,418,k.root
dispRity.metric.R,424,variances
dispRity.metric.R,433,ranges
dispRity.metric.R,442,quantiles
dispRity.metric.R,451,fun.dist.euclidean
dispRity.metric.R,456,fun.dist.manhattan
dispRity.metric.R,462,select.method
dispRity.metric.R,477,centroids
dispRity.metric.R,496,displacements
dispRity.metric.R,502,neighbours
dispRity.metric.R,512,mode.val
dispRity.metric.R,518,ellipse.volume
dispRity.metric.R,555,convhull.surface
dispRity.metric.R,561,convhull.volume
dispRity.metric.R,567,diagonal
dispRity.metric.R,573,get.ancestor.dist
dispRity.metric.R,579,get.root.dist
dispRity.metric.R,583,ancestral.dist
dispRity.metric.R,594,span.tree.length
dispRity.metric.R,602,pairwise.dist
dispRity.metric.R,610,radius
dispRity.metric.R,619,n.ball.volume
dispRity.metric.R,635,func.eve
dispRity.metric.R,651,func.div
dispRity.metric.R,663,get.slope.significant
dispRity.metric.R,667,get.slope.nonsignificant
dispRity.metric.R,672,angles
dispRity.metric.R,710,deviations
dispRity.metric.R,753,distance
dispRity.metric.R,763,edge.length.tree
dispRity.metric.R,776,centre.matrix
dispRity.metric.R,781,get.proj.length
dispRity.metric.R,786,quantiles.per.groups
dispRity.metric.R,791,group.dist
dispRity.metric.R,821,point.dist
dispRity.metric.R,833,vector.angle
dispRity.metric.R,838,get.rotation.matrix
dispRity.metric.R,853,orthogonise
dispRity.metric.R,872,linear.algebra.projection
dispRity.metric.R,928,correct.position
dispRity.metric.R,941,get.distance
dispRity.metric.R,947,projections
dispRity.metric.R,989,projections.between
dispRity.metric.R,1014,disalignment
dispRity.metric.R,1034,get.root
dispRity.metric.R,1038,get.ancestor
dispRity.metric.R,1050,get.tips
dispRity.metric.R,1054,get.nodes
dispRity.metric.R,1058,get.livings
dispRity.metric.R,1063,get.fossils
dispRity.metric.R,1068,sapply.projections
dispRity.metric.R,1074,projections.tree
dispRity.metric.R,1102,from_to[[i]]
dispRity.metric.R,1129,roundness
dispRity.multi.R,29,dispRity.multi.split
dispRity.multi.R,109,lapply.clean.data
dispRity.multi.R,118,dispRity.multi.apply
dispRity.multi.R,161,dispRity.multi.merge
dispRity.multi.R,180,dispRity.multi.merge.data
dispRity.multi.R,206,dispRity.multi.merge.disparity
dispRity.multi.R,207,merge.subset.pair
dispRity.utilities.R,32,make.dispRity
dispRity.utilities.R,75,fill.dispRity
dispRity.utilities.R,156,get.matrix
dispRity.utilities.R,176,get.disparity
dispRity.utilities.R,221,lapply.observed
dispRity.utilities.R,245,matrix.dispRity
dispRity.utilities.R,249,extract.dispRity
dispRity.utilities.R,320,get.subsets
dispRity.utilities.R,342,combine.subsets
dispRity.utilities.R,345,select.elements
dispRity.utilities.R,452,size.subsets
dispRity.utilities.R,456,n.subsets
dispRity.utilities.R,460,name.subsets
dispRity.utilities.R,524,add.tree
dispRity.utilities.R,539,get.tree
dispRity.utilities.R,614,remove.tree
dispRity.utilities.R,665,rescale.dispRity
dispRity.utilities.R,702,lapply.scale
dispRity.utilities.R,752,sort.dispRity
dispRity.utilities.R,838,extinction.subsets
dispRity.utilities_fun.R,2,extract.disparity.values
dispRity.utilities_fun.R,21,clean.list
dispRity.utilities_fun.R,27,recursive.sort
Expand All @@ -207,6 +213,11 @@ dispRity.utilities_fun.R,138,detect.edges
dispRity.utilities_fun.R,183,get.new.tree
dispRity.utilities_fun.R,247,toggle.multiphylo.list
dispRity.utilities_fun.R,266,get.one.tree.subset
dispRity.utilities_fun.R,280,slide.node.root
dispRity.utilities_fun.R,330,get.interval.subtrees
dispRity.utilities_fun.R,332,slice.one.tree
dispRity.utilities_fun.R,348,get.slice.subsets
dispRity.utilities_fun.R,355,sample.x
dispRity.wrapper.R,40,dispRity.through.time
dispRity.wrapper.R,96,dispRity.per.group
dispRity_fun.R,1,check.covar
Expand Down Expand Up @@ -371,9 +382,9 @@ reduce.space_fun.R,138,get.neigbhours
reduce.space_fun.R,153,get.prob.vector
reduce.space_fun.R,155,get.dimension.correction
reduce.space_fun.R,161,get.prob.axis
remove.zero.brlen.R,43,remove.zero.brlen
remove.zero.brlen.R,80,slide.one.node
remove.zero.brlen.R,105,recursive.remove.zero.brlen
remove.zero.brlen.R,54,remove.zero.brlen
remove.zero.brlen.R,98,slide.one.node
remove.zero.brlen.R,132,recursive.remove.zero.brlen
sanitizing.R,3,check.class
sanitizing.R,68,check.length
sanitizing.R,84,check.method
Expand All @@ -382,9 +393,11 @@ sanitizing.R,123,stop.call
sanitizing.R,128,check.list
sanitizing.R,140,expect_equal_round
sanitizing.R,145,add.rownames
sanitizing.R,150,check.dispRity.data
sanitizing.R,204,check.dispRity.tree
sanitizing.R,230,pass.fun
sanitizing.R,151,check.data
sanitizing.R,209,check.tree
sanitizing.R,248,pass.fun
sanitizing.R,284,check.multi.tree
sanitizing.R,298,check.dispRity.data
select.axes.R,70,select.axes
sim.morpho.R,66,sim.morpho
sim.morpho_fun.R,4,sample.distribution
Expand All @@ -396,21 +409,21 @@ sim.morpho_fun.R,60,k.sampler
sim.morpho_fun.R,70,rTraitDisc.mk
sim.morpho_fun.R,78,is.invariant
sim.morpho_fun.R,88,MIXED.model
slice.tree.R,40,slice.tree
slice.tree.R,108,adjust.prob
slice.tree.R,54,slice.tree
slice.tree.R,122,adjust.prob
slice.tree_fun.R,5,slice.tree.sharp
slice.tree_fun.R,19,get.crossings
slice.tree_fun.R,64,get.node.ID
slice.tree_fun.R,72,get.node.ID.expand
slice.tree_fun.R,85,get.branch.length
slice.tree_fun.R,134,slice.tree_parent.node
slice.tree_fun.R,148,slice.tree_offspring.node
slice.tree_fun.R,190,num.decimals
slice.tree_fun.R,198,slice.tree_DELTRAN
slice.tree_fun.R,242,slice.tree_ACCTRAN
slice.tree_fun.R,249,slice.tree_PROXIMITY
slice.tree_fun.R,279,slice.edge
slide.nodes.R,51,slide.nodes
slice.tree_fun.R,70,get.node.ID
slice.tree_fun.R,78,get.node.ID.expand
slice.tree_fun.R,91,get.branch.length
slice.tree_fun.R,140,slice.tree_parent.node
slice.tree_fun.R,154,slice.tree_offspring.node
slice.tree_fun.R,196,num.decimals
slice.tree_fun.R,204,slice.tree_DELTRAN
slice.tree_fun.R,248,slice.tree_ACCTRAN
slice.tree_fun.R,255,slice.tree_PROXIMITY
slice.tree_fun.R,285,slice.edge
slide.nodes.R,52,slide.nodes
slide.nodes_fun.R,2,slide.nodes.internal
space.maker.R,110,space.maker
space.maker.R,288,random.circle
Expand Down Expand Up @@ -450,10 +463,10 @@ test.dispRity_fun.R,130,get.quantiles.from.table
test.dispRity_fun.R,135,output.numeric.results
test.dispRity_fun.R,164,lapply.output.test.elements
test.dispRity_fun.R,173,output.htest.results
test.metric.R,95,test.metric
test.metric.R,143,model
test.metric.R,213,count.fails
test.metric.R,217,check.content
test.metric.R,93,test.metric
test.metric.R,141,model
test.metric.R,211,count.fails
test.metric.R,215,check.content
test.metric_fun.R,2,make.reduce.space.args
test.metric_fun.R,22,add.steps.to.args
test.metric_fun.R,27,transform.to.dispRity
Expand Down

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