Skip to content

Commit

Permalink
updated README
Browse files Browse the repository at this point in the history
  • Loading branch information
phauchamps committed Jan 16, 2024
1 parent 6fda9b4 commit 10f5e10
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,17 +1,17 @@
# Low Dimensional Projection of Cytometry Samples

[![Project Status: WIPInitial development is in progress, but there has not yet been a stable, usable release suitable for the public.](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#WIP)
[![Project Status: ActiveThe project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
[![R-CMD-check-bioc](https://github.com/UCLouvain-CBIO/CytoMDS/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/UCLouvain-CBIO/CytoMDS/actions?query=workflow%3AR-CMD-check-bioc)
[![license](https://img.shields.io/badge/license-GPL3.0-blue)](https://opensource.org/licenses/GPL-3.0)
[![codecov.io](https://codecov.io/github/UCLouvain-CBIO/CytoMDS/coverage.svg?branch=main)](https://codecov.io/github/UCLouvain-CBIO/CytoMDS?branch=main)

The `CytoEMD` package implements a low dimensional visualization of a set
The `CytoMDS` package implements a low dimensional visualization of a set
of cytometry samples, in order to visually assess the 'distances' between them.
This, in turn, can greatly help the user to identify quality issues
like batch effects or outlier samples, and/or check the presence of potential
sample clusters that might align with the experimental design.

The CytoMDS algorithm combines, on the one hand, the concept of Earth Mover's
The `CytoMDS` algorithm combines, on the one hand, the concept of Earth Mover's
Distance (EMD), a.k.a. Wasserstein metric and, on the other hand,
the Multi Dimensional Scaling (MDS) algorithm for the low dimensional
projection.
Expand Down

0 comments on commit 10f5e10

Please sign in to comment.