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LUCIDus 2.0.0
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@Yinqi93 Yinqi93 released this 18 May 21:34
· 203 commits to master since this release
v2.0.0
4f27a58

This is a feature update to the whole package. It rewrite all the codes to make the model fitting procedure much faster (10 to 50 times) than v1.0.0. Also, the grammar of LUCID changed to a more user-friendly version. (Please note, this version is not backward compatible)

New features

  • est.lucid(): previously called est_lucid. Fit the LUCID mode much faster; use mclust to initialize and produce a more stable estimate of the model; fix the bugs dealing with missing values in biomarker data.
  • summary.lucid(): previously called summary_lucid. An S3 method function which can directly be called by summary; provide with a nice table with detailed interpretation of the model; add option to calculate 95% CI based on result returned by boot.lucid().
  • plot.lucid(): previously called plot_lucid. An S3 method function which can be directly called by plot; change the color palette.
  • predict.lucid(): previously called pred_lucid. An S3 method function which can be directly called by predict.
  • boot.lucid(): previously called boot_lucid. Provide with a neat output.

Other changes

  • Update the vignette.
  • Updated the citation after getting published by the Bioinformatics;
  • Minor bug fixes.
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