Add flirt to Namespace; Modify _pkgdown.yml to change github page add… #19
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| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| permissions: read-all | |
| jobs: | |
| pkgdown: | |
| runs-on: ubuntu-latest | |
| # Only restrict concurrency for non-PR jobs | |
| concurrency: | |
| group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| permissions: | |
| contents: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| # **Add the setup-python action here** | |
| - uses: actions/setup-python@v4 | |
| id: setup_python | |
| with: | |
| python-version: '3.11' | |
| # **Set the RETICULATE_PYTHON environment variable** | |
| - name: Set RETICULATE_PYTHON environment variable | |
| run: echo "RETICULATE_PYTHON=${{ steps.setup_python.outputs.python-path }}/bin/python" >> $GITHUB_ENV | |
| - name: Install required R packages | |
| run: | | |
| install.packages('remotes', repos = 'https://cloud.r-project.org/') | |
| shell: Rscript {0} | |
| # Install dependencies, including EveTemplate | |
| - name: Install EveTemplate package | |
| run: | | |
| remotes::install_github("neuroconductor/EveTemplate") | |
| shell: Rscript {0} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_LIBS_USER: /home/runner/work/_temp/Library | |
| TZ: UTC | |
| _R_CHECK_SYSTEM_CLOCK_: FALSE | |
| NOT_CRAN: true | |
| RSPM: https://packagemanager.posit.co/cran/__linux__/jammy/latest | |
| RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/__linux__/jammy/latest | |
| - name: Install extrantsr package | |
| run: | | |
| remotes::install_github("muschellij2/extrantsr") | |
| shell: Rscript {0} | |
| - name: Install fslr package | |
| run: | | |
| remotes::install_github("muschellij2/fslr") | |
| shell: Rscript {0} | |
| - name: Install ANTsR package | |
| run: | | |
| remotes::install_github('ANTsX/ANTsR') | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::pkgdown, local::. | |
| needs: website | |
| - name: Build site | |
| run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | |
| shell: Rscript {0} | |
| - name: Deploy to GitHub pages 🚀 | |
| if: github.event_name != 'pull_request' | |
| uses: JamesIves/[email protected] | |
| with: | |
| clean: false | |
| branch: gh-pages | |
| folder: docs |