Version 0.3.0. Update pkgdown.yaml from .github to resolve CPython 3.…

…12 version issue
USCbiostats · Sep 18, 2024 · 6d259b5 · 6d259b5
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Showing 6 changed files with 16 additions and 6 deletions.
diff --git a/.Rproj.user/6A9A55E1/pcs/files-pane.pper b/.Rproj.user/6A9A55E1/pcs/files-pane.pper
@@ -5,5 +5,5 @@
             "ascending": true
         }
     ],
-    "path": "~/Desktop/MRIreduce/man/figures"
+    "path": "~/Desktop/MRIreduce/.github/workflows"
 }
diff --git a/.Rproj.user/6A9A55E1/pcs/source-pane.pper b/.Rproj.user/6A9A55E1/pcs/source-pane.pper
@@ -1,3 +1,3 @@
 {
-    "activeTab": 1
+    "activeTab": 2
 }
diff --git a/.Rproj.user/6A9A55E1/pcs/windowlayoutstate.pper b/.Rproj.user/6A9A55E1/pcs/windowlayoutstate.pper
@@ -1,12 +1,12 @@
 {
     "left": {
-        "splitterpos": 241,
+        "splitterpos": 380,
         "topwindowstate": "NORMAL",
         "panelheight": 663,
         "windowheight": 701
     },
     "right": {
-        "splitterpos": 236,
+        "splitterpos": 203,
         "topwindowstate": "NORMAL",
         "panelheight": 663,
         "windowheight": 701

diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
@@ -26,6 +26,16 @@ jobs:
         with:
           use-public-rspm: true
 
+      # **Add the setup-python action here**
+      - uses: actions/setup-python@v4
+        id: setup_python
+        with:
+          python-version: '3.11'
+
+      # **Set the RETICULATE_PYTHON environment variable**
+      - name: Set RETICULATE_PYTHON environment variable
+        run: echo "RETICULATE_PYTHON=${{ steps.setup_python.outputs.python-path }}/bin/python" >> $GITHUB_ENV
+
       - name: Install required R packages
         run: |
           install.packages('remotes', repos = 'https://cloud.r-project.org/')

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: MRIreduce
 Type: Package
 Title: MRIreduce: An R Package for ROI-Based Transformation of Neuroimages into High-Dimensional Data Frames
-Version: 0.2.0
+Version: 0.3.0
 Authors@R: c(
     person("Joshua", "Milstein", email = "[email protected]", role = c("aut")),
     person("Jinyao", "Tian", email = "[email protected]", role = c("aut", "cre"))

diff --git a/R/map2_eve.R b/R/map2_eve.R
@@ -119,4 +119,4 @@ map2_eve <- function(mask_img_path, cmap = 'bwr_r', alpha = 1, save_path = NULL,
 }
 
 ##test
-map2_eve(mask_img_path = "/Users/jinyaotian/Downloads/mask_nifti_GM_Volume_pm25_test1_avg_red.nii.gz",save_path = '/Users/jinyaotian/Desktop/test.png',title = "Mask on EVE Template" )
+#map2_eve(mask_img_path = "/Users/jinyaotian/Downloads/mask_nifti_GM_Volume_pm25_test1_avg_red.nii.gz",save_path = '/Users/jinyaotian/Desktop/test.png',title = "Mask on EVE Template" )