Pull dz_floatse WISDEM

WISDEM/.flake8

@@ -0,0 +1,5 @@
+[flake8]
+ignore = E731,E402,F,W504,W503,E501,C901
+exclude = .git,__pycache__,docs/source/conf.py,old,build,dist
+max-complexity = 10
+max-line-length=120

WISDEM/.github/ISSUE_TEMPLATE/bug_report.md

@@ -0,0 +1,30 @@
+---
+name: Bug report
+about: Create a report to help us improve
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+## Description
+_Describe the bug here_
+
+### Steps to reproduce issue
+_Please provide a minimum working example (MWE) if possible_
+
+1. …
+2. …
+3. …
+
+### Current behavior
+…
+
+### Expected behavior
+…
+
+
+### Code versions
+_List versions only if relevant_
+- Python
+- …

WISDEM/.github/ISSUE_TEMPLATE/feature_request.md

@@ -0,0 +1,14 @@
+---
+name: Feature request
+about: Suggest an idea for this project
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+# Description of feature
+Describe the feature here and provide some context. Under what scenario would this be useful?
+
+# Potential solution
+Can you think of ways to implement this?

WISDEM/.github/PULL_REQUEST_TEMPLATE.md

@@ -0,0 +1,28 @@
+Delete the text explanations below these headers and replace them with information about your PR.
+Please first consult the [developer guide](https://weis.readthedocs.io/en/latest/how_to_contribute_code.html) to make sure your PR follows all code, testing, and documentation conventions.
+
+## Purpose
+Explain the goal of this pull request. If it addresses an existing issue be sure to link to it. Describe the big picture of your changes here, perhaps using a bullet list if multiple changes are done to accomplish a single goal. If it accomplishes multiple goals, it may be best to create separate PR's for each.
+
+## Type of change
+What types of change is it?
+_Select the appropriate type(s) that describe this PR_
+
+- [ ] Bugfix (non-breaking change which fixes an issue)
+- [ ] New feature (non-breaking change which adds functionality)
+- [ ] Breaking change (non-backwards-compatible fix or feature)
+- [ ] Code style update (formatting, renaming)
+- [ ] Refactoring (no functional changes, no API changes)
+- [ ] Documentation update
+- [ ] Maintenance update
+- [ ] Other (please describe)
+
+## Testing
+Explain the steps needed to test the new code to verify that it does indeed address the issue and produce the expected behavior.
+
+## Checklist
+_Put an `x` in the boxes that apply._
+
+- [ ] I have run existing tests which pass locally with my changes
+- [ ] I have added new tests or examples that prove my fix is effective or that my feature works
+- [ ] I have added necessary documentation

WISDEM/.github/workflows/CI_WISDEM.yml

@@ -0,0 +1,144 @@
+name: CI_WISDEM
+
+# We run CI on push commits and pull requests on all branches
+on: [push, pull_request]
+
+# A workflow run is made up of one or more jobs that can run sequentially or in parallel
+jobs:
+  build_conda:
+    name: Conda Build-Test (${{ matrix.os }} Python ${{ matrix.python-version }})
+    runs-on: ${{ matrix.os }}
+
+    defaults:
+        run:
+            shell: bash -el {0}
+
+    strategy:
+      fail-fast: False
+      matrix:
+        os: [ubuntu-latest, windows-latest] #macos-latest, 
+        python-version: ["3.9", "3.10", "3.11"]
+
+    steps:
+      - name: checkout repository
+        uses: actions/checkout@v4
+
+      - name: Install conda/mamba
+        uses: conda-incubator/setup-miniconda@v2
+        # https://github.com/marketplace/actions/setup-miniconda
+        with:
+          # To use mamba, uncomment here, comment out the miniforge line
+          #mamba-version: "*"
+          miniforge-version: "latest"
+          auto-update-conda: true
+          python-version: ${{ matrix.python-version }}
+          environment-file: environment.yml
+          activate-environment: test
+          auto-activate-base: false
+
+      # Install dependencies of WEIS specific to ubuntu
+      - name: Add dependencies ubuntu specific
+        if: false == contains( matrix.os, 'windows')
+        run: |
+          conda install -y petsc4py gfortran
+
+      # Install dependencies of WISDEM specific to windows
+      - name: Add dependencies windows specific
+        if: contains( matrix.os, 'windows')
+        run: |
+          conda install -y m2w64-toolchain libpython
+
+      - name: Debug config
+        run: |
+          conda list
+          which -a gfortran
+          which pip
+
+      # Install WISDEM with setup
+      # Note: For some reason, pip --no-deps doesn't find conda packages and downloads everything
+      - name: Install WISDEM with setup
+        run: |
+          python setup.py install
+
+      # Install WISDEM with pip
+      #- name: Install WISDEM with pip for Unix
+      #  if: false == contains( matrix.os, 'windows')
+      #  run: |
+      #    python setup.py install
+
+      # Install WISDEM with pip
+      #- name: Install WISDEM with pip for Windows
+      #  if: contains( matrix.os, 'windows')
+      #  run: |
+      #      python setup.py install
+
+      # Debugging session
+      #- name: Setup tmate session
+      #  uses: mxschmitt/action-tmate@v3
+
+      # Run all tests
+      - name: Run tests
+        if: false == contains( matrix.os, 'windows')
+        run: |
+          pytest -p no:warnings --disable-warnings --cov=wisdem
+
+      # Run limited test on WINDOWS
+      - name: Limited Windows test
+        if: contains( matrix.os, 'windows')
+        run: |
+          cd wisdem/test/test_gluecode
+          pytest  -p no:warnings --disable-warnings test_g*
+
+      # Run coveralls
+      - name: Run coveralls
+        if: contains( matrix.os, 'ubuntu')
+        # This also works, https://github.com/AndreMiras/coveralls-python-action
+        #uses: AndreMiras/coveralls-python-action@develop
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: |
+          coveralls --service=github
+
+          
+  build_pip:
+    name: Pip Build-Test (${{ matrix.os }} Python ${{ matrix.python-version }})
+    runs-on: ${{ matrix.os }}
+
+    defaults:
+        run:
+            shell: bash -el {0}
+
+    strategy:
+      fail-fast: False
+      matrix:
+        os: [ubuntu-latest] #, windows-latest, macos-latest, 
+        python-version: ["3.10"]
+
+    steps:
+      - name: Setup GNU Fortran
+        uses: awvwgk/setup-fortran@v1
+        #with:
+        #    compiler: intel-classic
+
+      - name: checkout repository
+        uses: actions/checkout@v4
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v4
+        id: cp
+        with:
+            python-version: ${{ matrix.python-version }}
+            update-environment: true
+
+      # Install WISDEM with setup
+      # Note: For some reason, pip --no-deps doesn't find conda packages and downloads everything
+      - name: Install WISDEM with setup
+        run: |
+          '${{ steps.cp.outputs.python-path }}' -m pip install --upgrade pip install pytest
+          '${{ steps.cp.outputs.python-path }}' -m pip install -vv .
+
+      # Run limited tests
+      - name: Limited test
+        run: |
+          cd wisdem/test/test_gluecode
+          pytest -p no:warnings --disable-warnings test_g*

WISDEM/.github/workflows/Publish_WISDEM.yml

@@ -0,0 +1,66 @@
+name: Build and upload to PyPI
+# https://github.com/pypa/cibuildwheel/blob/main/examples/github-deploy.yml
+
+# Build on every branch push, tag push, and pull request change:
+#on: [push, pull_request]
+# Alternatively, to publish when a (published) GitHub Release is created, use the following:
+on:
+  release:
+    types:
+      - published
+
+jobs:
+  build_wheels:
+    name: Build wheels on ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest, windows-latest, macos-latest]
+
+    steps:
+      - name: Setup GNU Fortran
+        uses: awvwgk/setup-fortran@v1
+
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Build wheels
+        uses: pypa/[email protected]
+
+      - uses: actions/upload-artifact@v3
+        with:
+          path: ./wheelhouse/*.whl
+
+  build_sdist:
+    name: Build source distribution
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Build sdist
+        run: pipx run build --sdist
+
+      - uses: actions/upload-artifact@v3
+        with:
+          path: dist/*.tar.gz
+
+  upload_pypi:
+    needs: [build_wheels, build_sdist]
+    runs-on: ubuntu-latest
+    # upload to PyPI on every tag starting with 'v'
+    #if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v')
+    # alternatively, to publish when a GitHub Release is created, use the following rule:
+    if: github.event_name == 'release' && github.event.action == 'published'
+    steps:
+      - uses: actions/download-artifact@v3
+        with:
+          # unpacks default artifact into dist/
+          # if `name: artifact` is omitted, the action will create extra parent dir
+          name: artifact
+          path: dist
+
+      - uses: pypa/[email protected]
+        with:
+          user: __token__
+          password: ${{ secrets.pypi_password }}
+          # To test: repository_url: https://test.pypi.org/legacy/