scvi-criticism

Evaluation metrics for scvi-tools models

⚠️ !! WE'VE MOVED !! ⚠️

This package is now merged into the scvi-tools package and is accessible via the scvi.criticism submodule.
As part of the transition, we've also removed the generic plotting utilities. We'll give some plotting examples in upcoming scvi tutorials but otherwise will leave the freedom to end-users to use their custom plotting for their specific use case(s).
Thanks for using this tool and please leave any future feedback under scvi-tools issues as this repo will be archived.

OLD INSTRUCTIONS 👇

Getting started

Please refer to the documentation.

Installation

You need to have Python 3.8 or newer installed on your system. If you don't have Python installed, we recommend installing Miniconda.

1. Install the latest release of scvi-criticism from PyPI <https://pypi.org/project/scvi-criticism/>_:

pip install scvi-criticism

2. Install the latest development version:

pip install git+https://github.com/YosefLab/scvi-criticism.git@main

Release notes

See the changelog.

Contact

For questions and help requests, you can reach out in the scverse discourse. If you found a bug, please use the issue tracker.

Citations

N/A

Acknowledgements

Some of the code in this package was adapted from draft code authored by @adamgayoso.