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SARAH

SARAH (Separation of Aligned Reads into Alleles based on Haplotype)

usage: SARAH.py [-h] -n NAME -hap HAPLOTYPE -b BAM -c CHROM [-s SCORE] [-r REFERENCE] [-d DATA] [-t THREADS] [-N NUMBER] SARAH.py: error: the following arguments are required: -n/--NAME, -hap/--HAPLOTYPE, -b/--BAM, -c/--CHROM

Figure 1B

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