PanSV

Pangenome

• cactus: a reference-free whole-genome alignment program, as well as a pagenome graph construction toolkit
• pggb
• Giraffe

Plots

• plotsr
• RectChr

Pipeline

• AMPRIL-genomes

Annotation

• Comparative-Annotation-Toolkit
• RNA-Seq

datasets

• GIAB
• giab_data_indexes
• Chinese-Pangenome-Consortium-Phase-I
• human-pangenomics
• HPP_Year1_Data_Freeze_v1.0: The Human Pangenome Reference Consortium produced sequencing data for assembly of 30 samples
• HPP
• pantranscriptomes
• The International Genome Sample Resource
• HGSVC3
• HGSVC2
• HGSVC2 assembly
• HGSVC3 dataset
• NHGRI_UCSU
• phytozome
• legumedata