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@abcwcm

Applied Bioinformatics Core @ Weill Cornell Medicine

Turning sequencing reads into biomedically-relevant answers. Scripts written by Paul Zumbo and Friederike Dündar.

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  1. Chandran2021 Chandran2021 Public

    Code and access to data related to the SIFT-seq publication by Chandran et al., Nature Medicine (2022)

    HTML 1

  2. GeartySchietinger GeartySchietinger Public

    Scripts related to bulkRNA-seq as well as single-cell CITE-seq and VDJ-seq data of Gearty et al. (2021)

    HTML 5 4

  3. Notaras_MolPsy Notaras_MolPsy Public

    Code for the analysis of brain-organoid-derived single-cell RNA-seq data as published in Notaras et al., 2021

    HTML 2

  4. Shakiba2020 Shakiba2020 Public

    Code for the analyses of bulk RNA-seq and ATAC-seq presented in Shakiba et al., J Exp Med (2021)

    Makefile 1

  5. Scott2019 Scott2019 Public

    Code and data for the bulk RNA-seq and bulk ATAC-seq data of tumor-infiltrating CD8 T cells (and controls) as published in Scott et al., Nature (2019).

    Makefile

Repositories

Showing 10 of 25 repositories
  • CZI_MI_mouseZebrafish Public

    Scripts for the analysis of scRNA-seq data of mouse and zebrafish

    abcwcm/CZI_MI_mouseZebrafish’s past year of commit activity
    HTML 0 MIT 0 3 0 Updated Nov 6, 2024
  • Guo2024 Public
    abcwcm/Guo2024’s past year of commit activity
    Makefile 0 0 0 0 Updated Oct 22, 2024
  • abcwcm/piskounova_ribo’s past year of commit activity
    Shell 0 0 0 0 Updated Sep 4, 2024
  • abcwcm/Espinosa-Carrasco2024’s past year of commit activity
    Makefile 0 0 0 0 Updated Apr 30, 2024
  • abcwcm/Rudloff2022’s past year of commit activity
    HTML 3 0 0 0 Updated Apr 25, 2023
  • abcwcm/CopertinoHODHbt’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Mar 5, 2023
  • RubioNavarro_Pancreas Public

    Scripts related to single-cell and bulk RNA-seq data of mouse pancreata as presented by Rubio-Navarro et al.

    abcwcm/RubioNavarro_Pancreas’s past year of commit activity
    HTML 1 MIT 0 0 0 Updated Jan 14, 2023
  • Cao_Epicardium Public

    Scripts related to scRNA-seq data analysis

    abcwcm/Cao_Epicardium’s past year of commit activity
    1 MIT 0 0 0 Updated Jan 6, 2023
  • abcwcm/Vartanian2023’s past year of commit activity
    Makefile 0 0 0 0 Updated Jan 6, 2023
  • CovaxxHIV Public

    Scripts and read counts for bulk RNA-seq

    abcwcm/CovaxxHIV’s past year of commit activity
    HTML 0 0 0 0 Updated Sep 5, 2022

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