Initial commit

Makefile

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+.PHONY: clean
+
+EXTRASTYS = abhepexpt.sty abhep.sty abmath.sty lineno.sty siunitx.sty SIunits.sty varwidth.sty
+
+thesis.pdf: thesis.tex preamble.tex chap1.tex chap2.tex chap3.tex frontmatter.tex appendices.tex
+	@rm -f $(EXTRASTYS)
+	unzip extrastyles.zip
+	@rm -f thesis.{aux,toc,lof,lot}
+	(pdflatex thesis && bibtex thesis && pdflatex thesis && pdflatex thesis) || rm -f $(EXTRASTYS) thesis.pdf
+	@rm -f thesis.{aux,toc,lof,lot}
+	@rm -f $(EXTRASTYS)
+
+clean:
+	@rm -f $(EXTRASTYS)
+	@rm -f thesis.pdf thesis.log thesis.aux
+	@rm -f *.bbl *.blg *.lof *.cut
+	@rm -f *.lot *.out *.toc

appendices.tex

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+%% The "\appendix" call has already been made in the declaration
+%% of the "appendices" environment (see thesis.tex).
+\chapter{Pointless extras}
+\label{app:Pointless}
+
+\chapterquote{%
+Le savant n'\'etudie pas la nature parce que cela est utile; \\
+\indent il l'\'etudie parce qu'il y prend plaisir, \\
+\indent et il y prend plaisir parce qu'elle est belle.}%
+{Henri Poincar\'e, 1854--1912}
+
+Appendixes (or should that be ``appendices''?) make you look really clever, 'cos
+it's like you had more clever stuff to say than could be fitted into the main
+bit of your thesis. Yeah. So everyone should have at least three of them\dots
+
+\section{Like, duh}
+\label{sec:Duh}
+Padding? What do you mean?
+
+\section{$y = \alpha x^2$}
+\label{sec:EqnTitle}
+See, maths in titles automatically goes bold where it should (and check the
+table of contents: it \emph{isn't} bold there!) Check the source: nothing
+needs to be specified to make this work. Thanks to Donald Arsenau for the
+teeny hack that makes this work.
+
+%% Big appendixes should be split off into separate files, just like chapters
+%\input{app-myreallybigappendix}

backmatter.tex

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+%\begin{colophon}
+%  This thesis was made in \LaTeXe{} using the ``hepthesis'' class~\cite{hepthesis}.
+%\end{colophon}
+
+%% You're recommended to use the eprint-aware biblio styles which
+%% can be obtained from e.g. www.arxiv.org. The file mythesis.bib
+%% is derived from the source using the SPIRES Bibtex service.
+\bibliographystyle{h-physrev}
+\bibliography{mythesis}
+
+%% I prefer to put these tables here rather than making the
+%% front matter seemingly interminable. No-one cares, anyway!
+\listoffigures
+\listoftables
+
+%% If you have time and interest to generate a (decent) index,
+%% then you've clearly spent more time on the write-up than the 
+%% research ;-)
+%\printindex

chap1.tex

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+\chapter{Introduction}
+\label{chap:SomeStuff}
+
+%% Restart the numbering to make sure that this is definitely page #1!
+\pagenumbering{arabic}
+
+%% Note that the citations in this chapter use the journal and
+%% arXiv keys: I used the SLAC-SPIRES online BibTeX retriever
+%% to build my bibliography. There are also quite a few non-standard
+%% macros, which come from my personal collection. You can have them
+%% if you want, or I might get round to properly releasing them at
+%% some point myself.
+
+\chapterquote{I've got that boom boom pow}%
+{Fergie}%: Blackwood's Magazine May 1830
+
+Introduce neutrinos here~\cite{Phys.Rev.Lett.19.1264, Phys.Rev.D2.1285,hep-ph/0410370}.
+
+\section{Neutrino Oscillations}
+\label{sec:neutrinooscillations}
+Neutrino oscillations are really kool

chap2.tex

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+%\begin{sidewaysfigure}
+%  \begin{center}
+%  \includegraphics[width=0.8\textheight]{lhcb-detector-cross-section}
+%  \caption[Cross-section view of \LHCb, cut in the non-bending $y$--$z$ plane]%
+%    {Cross-section view of \LHCb, cut in the non-bending $y$--$z$ plane.}
+%  \label{fig:LHCbCrossSection}
+%  \end{center}
+%\end{sidewaysfigure}
+
+
+
+\chapter{The T2K Experiment}
+\label{chap:T2KExperiment}
+
+
+\section{Accelerator complex}
+\label{sec:AcceleratorComplex}
+These are words
+
+\subsection{Proton Accelerators}
+\label{subsec:ProtonAccelerators}
+Stuff about the accelerator
+
+\subsection{Neutrino beamline}
+\label{subsec:NeutrinoBeamline}
+Stuff about the beamline
+
+\section{Near detector complex}
+\label{sec:NearDetectorComplex}
+Stuff about comples
+
+\subsection{Multi-Pixel Photon Counter}
+\label{subsec:MPPC}
+MPPCs
+
+\subsection{INGRID}
+\label{subsec:INGRID}
+Stuff about INGRID
+
+\subsection{ND280}
+\label{subsec:ND280}
+ND280 time
+
+\subsubsection{The fine grain detectors}
+\label{subsubsec:FGD}
+FGDS
+
+\subsubsection{The time projection chambers}
+\label{subsubsec:TPC}
+TPCs
+
+\subsubsection{The $\pi^0$ detector}
+\label{subsubsec:pi0detector}
+Here is ref for \ref{subsubsec:TPC}
+pi0
+
+\subsubsection{The electromagnetic calorimeters}
+\label{subsubsec:ecal}
+The beasts
+
+\subsubsection{The side muon range detector}
+\label{subsubsec:smrd}
+Why bother?
+
+\subsection{The far detector}
+I mean SK
+
+

chap3.tex

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+%\begin{sidewaysfigure}
+%  \begin{center}
+%  \includegraphics[width=0.8\textheight]{lhcb-detector-cross-section}
+%  \caption[Cross-section view of \LHCb, cut in the non-bending $y$--$z$ plane]%
+%    {Cross-section view of \LHCb, cut in the non-bending $y$--$z$ plane.}
+%  \label{fig:LHCbCrossSection}
+%  \end{center}
+%\end{sidewaysfigure}
+
+
+
+\chapter{ND280 ECal event reconstruction and software}
+\label{chap:ND280Software}
+Lots of software stuff
+
+\section{Real data processing}
+\label{sec:datachain}
+Process the data.  MAY NOT INCLUDE THIS
+
+\section{Monte Carlo event simulation}
+\label{sec:MCchain}
+Process the MC
+
+\subsection{Neutrino flux prediction}
+\label{subsec:NeutrinoFluxPrediction}
+I guess the flux is quite bit
+
+\subsection{Neutrino interaction simulation}
+\label{subsec:NeutrinoInteractionSimulation}
+NEEEEEUT
+
+\subsection{ND280 detector simulation}
+\label{subsec:ND280DetectorSimulation}
+nd280mc is really good for this
+
+\subsection{Detector response simulation}
+\label{subsec:DetectorResponseSimulation}
+Is elecSim there?
+
+\subsection{Detector calibration}
+\label{subsec:DetectorCalibration}
+oaCalib calibrates
+
+\subsection{Event reconstruction}
+\label{subsec:EventReconstruction}
+oaRecon yo!
+
+\section{ECal event reconstruction}
+\label{sec:ECalEventReconstruction}
+All about ecalRecon
+
+\subsection{Hit preparation}
+\label{subsec:ECalHitPerparation}
+Hit prep
+
+\subsection{Basic clustering}
+\label{subsec:ECalBasicClustering}
+Baaasic
+
+\subsection{Cluster combination}
+\label{subsec:ECalCombineClusters}
+Combine dem clusters
+
+\subsection{Cluster expansion}
+\label{subsec:ECalExpandClusters}
+Expand dem clusters
+
+\subsection{3D cluster formation}
+\label{subsec:ECal3DMatching}
+Match the clusters
+
+\subsection{3D hit reconstruction}
+\label{subsec:ECal3DHitReconstruction}
+Least square those fits
+
+\subsection{Energy reconstruction}
+\label{subsec:ECalEnergyReconstruction}
+blah
+
+\subsection{Event classification}
+\label{subsec:ECalParticleIdentification}
+Track or shower?