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Analysis of nonsense errors using yeast ribosome profiling data from Weinberg et al. Cell Reports 2016.
R UpdatedSep 5, 2024 -
LaplacesDemon Public
Forked from LaplacesDemonR/LaplacesDemonA complete environment for Bayesian inference within R
R Other UpdatedJul 16, 2024 -
A reanalysis of the results from Rosenberg et al. Nat. Comm. 2022 using simulated data
R UpdatedMar 29, 2024 -
A repo with analyses for the examining codon usage relating to protein disorder and secondary structure
Roff UpdatedJan 9, 2024 -
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RibModelDev Public
Development repository for the R package ribModel
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A repository presenting the results from our analysis on the effects of intragenomic mutation bias variation within budding yeasts.
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EVome Public
Analysis of EVome proteomics data for examining co-secretion of C. elegans proteins
R UpdatedFeb 18, 2022 -
lecture_notes Public
Forked from popgenmethods/lecture_notesLecture Notes on Computational and Mathematical Population Genetics
UpdatedMay 5, 2021 -
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example-datasets Public
Forked from riboviz/example-datasetsExample datasets to run with RiboViz
Apache License 2.0 UpdatedDec 2, 2020 -
riboviz Public
Forked from shahpr/RiboVizAnalysis and Visualization of Ribosome Profiling Data
HTML Apache License 2.0 UpdatedOct 5, 2020 -
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codon_TASEP Public
Forked from andreariba/codon_TASEPsimulate TASEP model with codon-specific elongation rates
C++ UpdatedJun 26, 2020 -
ribotish Public
Forked from zhpn1024/ribotishRibo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
Python GNU General Public License v3.0 UpdatedMay 22, 2020 -
GeneExpression_coevolution Public
A repository for the data and R scripts used for analyzing coevolution of gene expression in a set of fungi
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popgen-notes Public
Forked from cooplab/popgen-notesPopulation genetics notes
PostScript UpdatedOct 11, 2018 -
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phylometh_diversification Public
Forked from bomeara/phylometh_diversificationDiversification exercise
HTML GNU General Public License v3.0 UpdatedApr 5, 2018 -
phylometh_correlated Public
Forked from bomeara/phylometh_correlatedFor correlated traits
HTML GNU General Public License v2.0 UpdatedMar 7, 2018 -
phylometh_continuous Public
Forked from bomeara/phylometh_continuousContinuous trait exercise for PhyloMeth
Python GNU General Public License v2.0 UpdatedMar 7, 2018 -
phylometh_discrete Public
Forked from bomeara/phylometh_discreteDiscrete trait exercise
HTML UpdatedMar 7, 2018 -
phylomethinfo Public
Forked from bomeara/phylomethinfoWebsite for PhyloMeth course
HTML GNU General Public License v3.0 UpdatedFeb 6, 2018 -
ethereumj Public
Forked from EthereumNominis/ethereumjJava GNU Lesser General Public License v3.0 UpdatedJan 22, 2018 -
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corHMM-1 Public
Forked from thej022214/corHMMFits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as “hidden” states in a Markov process.
R UpdatedOct 30, 2017