Bugfix for CLI grn step

- Determination of filename extension - Related to #175
aertslab · Jun 5, 2020 · 264fc7e · 264fc7e
1 parent bd27edc
commit 264fc7e
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/pyscenic/cli/pyscenic.py b/src/pyscenic/cli/pyscenic.py
@@ -77,7 +77,7 @@ def find_adjacencies_command(args):
 
     LOGGER.info("Writing results to file.")
 
-    extension = PurePath(fname).suffixes
+    extension = PurePath(args.output.name).suffixes
     network.to_csv(args.output, index=False, sep=suffixes_to_separator(extension))