Merge pull request #2 from ag-computational-bio/mongo

Mongo
ag-computational-bio · May 20, 2021 · e18e3da · e18e3da
2 parents 00e4bd7 + 23a2816
commit e18e3da
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Showing 9 changed files with 245 additions and 243 deletions.
diff --git a/.kube/dev-deployment.yaml b/.kube/dev-deployment.yaml
@@ -25,30 +25,20 @@ spec:
       containers:
       - env:
         - name: JobContainer
-          value: harbor.computational.bio.uni-giessen.de/bakta/bakta-web-job:0.1.0-beta.10
+          value: harbor.computational.bio.uni-giessen.de/bakta/bakta-web-job:0.1.0-beta.11
         - name: BaseKey
           value: data/dev
-        - name: DBName
-          value: bakta
-        - name: DBPort
-          value: "3306"
-        - name: DBUser
-          value: bakta
-        - name: DataBucket
-          value: baktadata
-        - name: DatabaseHost
-          value: bakta-mysql.bakta-dev.svc.cluster.local
         - name: GRPC_GO_LOG_SEVERITY_LEVEL
           value: debug
         - name: GRPC_GO_LOG_VERBOSITY_LEVEL
           value: "2"
         - name: InCluster
           value: "true"
-        - name: DBPassword
+        - name: MongoPassword
           valueFrom:
             secretKeyRef:
-              key: mysql-password
-              name: bakta-mysql
+              key: mongodb-password
+              name: bakta-mongo-mongodb
         - name: AWS_ACCESS_KEY_ID
           valueFrom:
             secretKeyRef:
@@ -64,7 +54,7 @@ spec:
             secretKeyRef:
               key: Token
               name: authhandler
-        image: harbor.computational.bio.uni-giessen.de/bakta/bakta-web-backend:0.2.9-beta.17
+        image: harbor.computational.bio.uni-giessen.de/bakta/bakta-web-backend:0.2.9-beta.32
         imagePullPolicy: Always
         name: baktabackend
         ports:

diff --git a/config/config.yaml b/config/config.yaml
@@ -3,8 +3,11 @@ Objectstorage:
     UserBucket: baktauserdata
     DBBucket: baktadbs
     BaseKey: data/dev
-Database:
-  Backend: Postgres
+MongoHost: localhost
+MongoDBName: bakta
+MongoUser: bakta
+MongoUserAuthSource: bakta
+MongoPort: 27017
 K8sNamespace: "bakta-dev"
 UpdateService:
   Name: baktawebbackend