Merge pull request #16 from ag-computational-bio/json_config

Changed job_configurator.go to use a JSON string as jobconfig. V2
ag-computational-bio · Nov 23, 2021 · ea26348 · ea26348
2 parents f28997c + b4f86b2
commit ea26348
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/scheduler/job_configurator.go b/scheduler/job_configurator.go
@@ -37,6 +37,8 @@ func createDownloadConf(job *database.Job, prodigaltf bool, replicontsv bool) (s
 func createBaktaConf(job *database.Job, conf *api.JobConfig) ([]byte, error) {
 	var confStringElements []string
 
+	confStringElements = append(confStringElements, "bakta")
+
 	confStringElements = append(confStringElements, "--tmp-dir", "/cache")
 	confStringElements = append(confStringElements, "--threads", "12")
 	confStringElements = append(confStringElements, "--prefix", "result")