Update makefile

agnieszkadanek · Nov 11, 2020 · edd41d9 · edd41d9
1 parent ddfaf69
commit edd41d9
Showing 1 changed file with 5 additions and 4 deletions.
diff --git a/makefile b/makefile
@@ -26,8 +26,9 @@ endif
 
 
 CC = g++
-CFLAGS	= -Wall -O3 -m64 -std=c++11 $(OMP_FLAGS) -pthread -mavx -lz -I $(KMER_DB_LIBS_DIR) -I $(EXTRA_LIBS_DIR) -I $(PREFIX)/include
-CFLAGS_AVX2	= -Wall -O3 -m64 -std=c++11 $(OMP_FLAGS) -pthread -mavx2 -lz -I $(KMER_DB_LIBS_DIR) -I $(EXTRA_LIBS_DIR) -I $(PREFIX)/include
+LDFLAGS += 
+CFLAGS	+= -Wall -O3 -m64 -std=c++11 $(OMP_FLAGS) -pthread -mavx -lz -I $(KMER_DB_LIBS_DIR) -I $(EXTRA_LIBS_DIR)
+CFLAGS_AVX2	+= $(CFLAGS) 
 CLINK	= -lm -O3 -std=c++11 -lpthread $(OMP_FLAGS) -mavx $(ABI_FLAGS) 
 
 OBJS := $(KMER_DB_MAIN_DIR)/analyzer.o \
@@ -71,10 +72,10 @@ endif
 
 ifeq ($(INTERNAL_ZLIB),true)
 kmer-db: $(OBJS) $(AVX_OBJS)
-	$(CC) $(CLINK) -o $(KMER_DB_ROOT_DIR)/$@ $(OBJS) $(AVX_OBJS) $(EXTRA_LIBS_DIR)/libz.a
+	$(CC) $(CLINK) $(LDFLAGS) -o $(KMER_DB_ROOT_DIR)/$@ $(OBJS) $(AVX_OBJS) $(EXTRA_LIBS_DIR)/libz.a
 else
 kmer-db: $(OBJS) $(AVX_OBJS)
-	$(CC) $(CLINK) -L$(PREFIX)/lib -lz -o $(KMER_DB_ROOT_DIR)/$@ $(OBJS) $(AVX_OBJS) 
+	$(CC) $(CLINK) $(LDFLAGS) -o $(KMER_DB_ROOT_DIR)/$@ $(OBJS) $(AVX_OBJS) 
 endif	
 
 clean: