config.yaml
To configure kGWASflow, you need to edit config/config.yaml file based on your needs. The explanation for each parameter is provided in the config.yaml file.
Below parameters has to be defined in order to run this workflow:
-
samples: The path of the sample sheet -
phenotype: The path of the phenotype sheet
If any post-GWAS options is activated:
-
ref:-
fasta: The path of the refrence genome fasta file
-
-
settings: Set of parameters to activate/deactivate the optional workflow steps and post-GWAS analysis options- ...
The user can activate/deactivate the optional workflow steps by simply toggling the activate parameter to true or false.
-
params: Set of parameters to define the settings of each tool used in the workflow- ...
