Issue 23: fix up setup.py (#24)

* add a little more stuff to delivery and try using a patched version of pydot3.

Added README.md and LICENSE to the egg data directory just because. Seems better to have it all around than to not have it at all. Might be misguided.

Built a patched version of [pydot3](https://github.com/log0/pydot3) in my [fork of it](https://github.com/al-niessner/pydot3/releases/tag/1.0.10) then pushed it to PyPI as [dawgie-pydot3](https://pypi.org/project/dawgie-pydot3/1.0.10/). Once built and deployed, then changed this setup.py to depend upon it.

* fix vulnerability

.ci/pypi.sh

@@ -45,8 +45,8 @@ fi
 
 # sudo pip3 install -U twine wheel setuptools
 export DAWGIE_VERSION=$1
-#wdir=$(mkdtemp -d)
-#cd $wdir
+wdir=$(mkdtemp -d)
+cd $wdir
 cd Python
 cp ../README.md README.md
 cat ../COPYRIGHT.txt > LICENSE
@@ -55,7 +55,7 @@ echo "" >> LICENSE
 cat ../LICENSE.txt >> LICENSE
 python3 setup.py sdist bdist_wheel
 twine check dist/*
-twine upload --verbose --repository-url https://test.pypi.org/legacy/ dist/*
+#twine upload --verbose --repository-url https://test.pypi.org/legacy/ dist/*
 #twine upload --verbose dist/*
-#cd -
-#rm -rf $wdir
+cd -
+rm -rf $wdir

Python/setup.py

@@ -45,12 +45,12 @@
 deps = ['bokeh>=1.2',
         'boto3>=1.7.80',
         'cryptography>=2.1.4',
+        'dawgie-pydot3==1.0.10',
         'GitPython>=2.1.11',
         'matplotlib>=2.1.1',
         'psycopg2>=2.7.4',
-        'pydot3==1.0.9',
         'pyparsing>=2.2',
-        'python-gnupg==0.4.3',
+        'python-gnupg==0.4.4',
         'pyxb==1.2.6',
         'requests>=2.20.0',
         'transitions==0.6.8',
@@ -105,6 +105,7 @@
                                "Operating System :: OS Independent",
                                'License :: Free To Use But Restricted',
                                'Development Status :: 5 - Production/Stable'],
+                  data_files=[('.', ['LICENSE', 'README.md'])],
                   description='Data and Algorithm Work-flow Generation, Introspection, and Execution (DAWGIE)',
                   license='see LICENSE file for details',
                   long_description=description,