Allow setting variables when using system packages (#795) #308
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| # This workflow will install Python dependencies, run tests and lint with a | |
| # variety of Python versions. For more information see: | |
| # https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Check PR | |
| 'on': | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| permissions: {} | |
| jobs: | |
| unittest: | |
| name: python${{ matrix.python-version }} | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python-version: | |
| - '3.6.8' # slc7, slc8 and cs8 containers | |
| - '3.7' | |
| - '3.8' | |
| - '3.9' | |
| - '3.10' | |
| - '3.11' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install test dependencies | |
| run: | | |
| sudo apt update -y | |
| sudo apt install -y curl libcurl4-gnutls-dev build-essential gfortran libmysqlclient-dev xorg-dev libglu1-mesa-dev libfftw3-dev libxml2-dev git unzip autoconf automake autopoint texinfo gettext libtool libtool-bin pkg-config bison flex libperl-dev libbz2-dev swig liblzma-dev libnanomsg-dev rsync lsb-release unzip environment-modules libglfw3-dev libtbb-dev python3-venv libncurses-dev environment-modules libxml2-dev libxslt1-dev | |
| python -m pip install --upgrade tox tox-gh-actions coverage | |
| - name: Run tests | |
| run: tox | |
| - name: Convert coverage information | |
| if: ${{ always() && github.event.repository.owner.login == 'alisw' }} | |
| run: | | |
| coverage combine .tox/coverage.* | |
| # Codecov only understands XML, JSON and LCOV files. | |
| # Apparently, patching os.readlink in unit tests interferes with | |
| # finding some source files, but our source shouldn't be affected, so | |
| # ignore these errors. | |
| coverage json --ignore-errors -o coverage.json | |
| - name: Upload coverage information | |
| if: ${{ always() && github.event.repository.owner.login == 'alisw' }} | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: coverage.json | |
| lint: | |
| name: lint | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.x | |
| - name: Install dependencies | |
| run: python -m pip install --upgrade tox tox-gh-actions | |
| - name: Run linters | |
| run: tox -e lint | |
| documentation: | |
| name: documentation | |
| runs-on: ubuntu-latest | |
| container: | |
| image: jekyll/jekyll | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Test documentation | |
| run: | | |
| chmod -R a+rwX . | |
| jekyll build -s docs -d _site --baseurl . | |
| script/custom_htmlproofer.rb |