#py_scripts misc short python scripts!
Translates a fasta file containing mixed lowercase and uppercase nucleotides or amino acids into either only uppercase or only lowecase.
Usage: fasta_capitals.py <infile> <action>
Actions: u/U for translation into uppercase. l/L for translation into lowercase.
Converts a custom blast result or minimal bed file into a minimal gff file. Only accound for name, start, stop and orientation.
Usage: blast_to_gff.py <infile> <outfile.gff>
Note: Blast needs to be run with custom ouput for this script to work. The scripts only needs 3 fields in the input file: hit name, start, stop (tab-delimited). There is supprot for more fields, however. The information contained in additional fields will be diplayed in the comment field (field 9) of the GFF file.