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1.18.0
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@Alan-Collins Alan-Collins released this 24 Jul 16:47
· 35 commits to main since this release
1.18.0
34d4d68

Changelog

Report script:

  • Add proper CLI interface
  • Remove highlighting for problem results
  • Add allele length to locus location table
  • Add minimum depth and number of bases below depth threshold to read mapping table
  • Add CLI option to abbreviate sample and contig names for better table appearance
  • General style improvements and typo corrections

El_gato:

  • Add better logic for handling user-provided DB. Should perform as expected now
  • Add minimum of 5 depth of major allele for identifying primary mompS locus when only 1 read maps to minor allele
  • Error out on wrong Python version
  • Fix bug that sometimes causes ST 1724 to be incorrectly called as 1241
  • Minor changes to style

SBT database:

  • Update to May 2024 version
  • Remove unneeded files
Assets 2
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