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apposada/README.md

Comparative studies in regulatory genomics at the onset of key evolutionary transitions in animals.

R/UNIX/Python + Snakemake

I also like to tinker around with operating systems and video game data and assets.

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  1. scbe-lab/regulatory_logic scbe-lab/regulatory_logic Public

    Code and data for the manuscript "The Regulatory Logic of Planarian Stem Cell Differentiation"

    Jupyter Notebook

  2. ptychodera_cisreg_development ptychodera_cisreg_development Public

    Analyses of the Ptychodera flava RNASeq+ATACSeq project

    HTML 2

  3. comparABle comparABle Public

    R 3

  4. scbe-lab/pristina-cell-type-atlas scbe-lab/pristina-cell-type-atlas Public

    Analyses of the Pristina leidyi cell type atlas manuscript

    HTML 5 2

  5. gene_annot gene_annot Public

    snakemake pipeline from transcripts to annotated protein sequences

    Python 3

  6. GenetSoc_GRN_Oxford_2023_P18 GenetSoc_GRN_Oxford_2023_P18 Public

    Genetics Society GRN Metting Oxford 2023 - P18

    R