change -s to -o

asreviewcontrib/makita/templates/template_arfi.txt.template

@@ -47,7 +47,7 @@ python -m asreview wordcloud {{ dataset.input_file }} -o {{ output_folder }}/fig
 # Simulate runs, collect metrics and create plots
 mkdir {{ output_folder }}/simulation/{{ dataset.input_file_stem }}/state_files
 {% for prior in dataset.priors %}
-python -m asreview simulate {{ dataset.input_file }} -s {{ output_folder }}/simulation/{{ dataset.input_file_stem }}/state_files/sim_{{ dataset.input_file_stem }}_{{ prior[0] }}.asreview --prior_record_id {{ " ".join(prior) }} --seed {{ dataset.model_seed }} -m {{ classifier }} -e {{ feature_extractor }} -q {{ query_strategy }} -b {{ balance_strategy }} --n_instances {{ instances_per_query }} --n-stop {{ n-stop }}
+python -m asreview simulate {{ dataset.input_file }} -o{{ output_folder }}/simulation/{{ dataset.input_file_stem }}/state_files/sim_{{ dataset.input_file_stem }}_{{ prior[0] }}.asreview --prior_record_id {{ " ".join(prior) }} --seed {{ dataset.model_seed }} -m {{ classifier }} -e {{ feature_extractor }} -q {{ query_strategy }} -b {{ balance_strategy }} --n_instances {{ instances_per_query }} --n-stop {{ n-stop }}
 python -m asreview metrics {{ output_folder }}/simulation/{{ dataset.input_file_stem }}/state_files/sim_{{ dataset.input_file_stem }}_{{ prior[0] }}.asreview -o {{ output_folder }}/simulation/{{ dataset.input_file_stem }}/metrics/metrics_sim_{{ dataset.input_file_stem }}_{{ prior[0] }}.json
 {% endfor %}
 

asreviewcontrib/makita/templates/template_multimodel.txt.template

@@ -55,7 +55,7 @@ mkdir {{ output_folder }}/simulation/{{ dataset.input_file_stem }}/state_files
 # Skipped {{ classifier }} + {{ feature_extraction }} + {{ query_strategy}} model
 {% else %}# Classifier = {{ classifier }}, Feature extractor = {{ feature_extraction }}, Query strategy = {{ query_strategy }}, Balance strategy = {{balance_strategy}}
 {% for run in range(n_runs) %}
-python -m asreview simulate {{ dataset.input_file }} -s {{ output_folder }}/simulation/{{ dataset.input_file_stem }}/state_files/sim_{{ dataset.input_file_stem }}_{{ classifier }}_{{ feature_extraction }}_{{ query_strategy }}_{{ balance_strategy }}{{ "_{}".format(run) if n_runs > 1 else "" }}.asreview --model {{ classifier }} --query_strategy {{query_strategy}} --feature_extraction {{ feature_extraction }} --prior_seed {{ dataset.prior_seed + run }} --seed {{ dataset.model_seed }} -q {{ query_strategy }} -b {{ balance_strategy }} --n_instances {{ instances_per_query }} --n-stop {{ n-stop }}
+python -m asreview simulate {{ dataset.input_file }} -o{{ output_folder }}/simulation/{{ dataset.input_file_stem }}/state_files/sim_{{ dataset.input_file_stem }}_{{ classifier }}_{{ feature_extraction }}_{{ query_strategy }}_{{ balance_strategy }}{{ "_{}".format(run) if n_runs > 1 else "" }}.asreview --model {{ classifier }} --query_strategy {{query_strategy}} --feature_extraction {{ feature_extraction }} --prior_seed {{ dataset.prior_seed + run }} --seed {{ dataset.model_seed }} -q {{ query_strategy }} -b {{ balance_strategy }} --n_instances {{ instances_per_query }} --n-stop {{ n-stop }}
 python -m asreview metrics {{ output_folder }}/simulation/{{ dataset.input_file_stem }}/state_files/sim_{{ dataset.input_file_stem }}_{{ classifier }}_{{ feature_extraction }}_{{ query_strategy }}_{{ balance_strategy }}{{ "_{}".format(run) if n_runs > 1 else "" }}.asreview -o {{ output_folder }}/simulation/{{ dataset.input_file_stem }}/metrics/metrics_sim_{{ dataset.input_file_stem }}_{{ classifier }}_{{ feature_extraction }}_{{ query_strategy }}_{{ balance_strategy }}{{ "_{}".format(run) if n_runs > 1 else "" }}.json
 {% endfor %}{% endif %}
 {% endfor %}

asreviewcontrib/makita/templates/template_prior.txt.template

@@ -39,10 +39,10 @@ python -m asreview wordcloud {{ filepath_without_priors }} -o {{ output_folder }
 {% endif %}
 
 {% for run in range(n_runs) %}
-python -m asreview simulate {{ filepath_with_priors }} -s {{ output_folder }}/simulation/state_files/sim_custom_priors{{ "_{}".format(run) if n_runs > 1 else "" }}.asreview --seed {{ model_seed + run }} -m {{ classifier }} -e {{ feature_extractor }} -q {{ query_strategy }} -b {{ balance_strategy }} --n_instances {{ instances_per_query }} --n-stop {{ n-stop }} --prior_idx {{ prior_idx }}
+python -m asreview simulate {{ filepath_with_priors }} -o{{ output_folder }}/simulation/state_files/sim_custom_priors{{ "_{}".format(run) if n_runs > 1 else "" }}.asreview --seed {{ model_seed + run }} -m {{ classifier }} -e {{ feature_extractor }} -q {{ query_strategy }} -b {{ balance_strategy }} --n_instances {{ instances_per_query }} --n-stop {{ n-stop }} --prior_idx {{ prior_idx }}
 python -m asreview metrics {{ output_folder }}/simulation/state_files/sim_custom_priors{{ "_{}".format(run) if n_runs > 1 else "" }}.asreview -o {{ output_folder }}/simulation/metrics/metrics_sim_custom_priors{{ "_{}".format(run) if n_runs > 1 else "" }}.json
 
-python -m asreview simulate {{ filepath_without_priors }} -s {{ output_folder }}/simulation/state_files/sim_minimal_priors{{ "_{}".format(run) if n_runs > 1 else "" }}.asreview --prior_seed {{ prior_seed + run }} --seed {{ model_seed + run }} -m {{ classifier }} -e {{ feature_extractor }} -q {{ query_strategy }} -b {{ balance_strategy }} --n_instances {{ instances_per_query }} --n-stop {{ n-stop }}
+python -m asreview simulate {{ filepath_without_priors }} -o{{ output_folder }}/simulation/state_files/sim_minimal_priors{{ "_{}".format(run) if n_runs > 1 else "" }}.asreview --prior_seed {{ prior_seed + run }} --seed {{ model_seed + run }} -m {{ classifier }} -e {{ feature_extractor }} -q {{ query_strategy }} -b {{ balance_strategy }} --n_instances {{ instances_per_query }} --n-stop {{ n-stop }}
 python -m asreview metrics {{ output_folder }}/simulation/state_files/sim_minimal_priors{{ "_{}".format(run) if n_runs > 1 else "" }}.asreview -o {{ output_folder }}/simulation/metrics/metrics_sim_minimal_priors{{ "_{}".format(run) if n_runs > 1 else "" }}.json
 
 {% endfor %}