feat: remove `numba` #248

Workflow file for this run

	---
	name: CI

	on:
	# push:
	# paths:
	# - 'src/**'
	# - 'tests/**'
	# - '.github/workflows/CI.yml'
	# - 'pyproject.toml'
	# - 'poetry.lock'
	# - 'docs/**'
	pull_request:
	branches:
	- main
	- 'release**'
	paths:
	- 'src/**'
	- 'tests/**'
	- '.github/workflows/CI.yml'
	- 'pyproject.toml'
	- 'poetry.lock'
	- 'docs/**'

	jobs:
	test:
	runs-on: ${{ matrix.os }}
	strategy:
	fail-fast: false
	matrix:
	os: [ubuntu-latest, macOS-latest]
	python-version: ['3.10', '3.11']

	steps:
	- uses: actions/checkout@v3

	# Set up Python environment
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v3
	with:
	python-version: ${{ matrix.python-version }}

	# Setup macOS
	- name: Setup macOS
	if: runner.os == 'macOS'
	run: brew install libomp

	# Install Poetry
	- name: Install Poetry
	run: \|
	curl -sSL https://install.python-poetry.org \| python -

	# Add Poetry to PATH
	- name: Add Poetry to PATH
	run: echo "$HOME/.local/bin" >> $GITHUB_PATH

	# Configure poetry
	- name: Configure poetry
	run: poetry config virtualenvs.in-project true

	# Cache Poetry dependencies
	- name: Cache Poetry dependencies
	uses: actions/cache@v3
	with:
	path: .venv
	key: venv-${{ runner.os }}-poetry-${{ matrix.python-version }}-${{ hashFiles('**/poetry.lock') }}
	restore-keys: \|
	${{ runner.os }}-poetry-${{ matrix.python-version }}-
	${{ runner.os }}-poetry-
	${{ runner.os }}-

	# Ensure cache is healthy
	- name: Ensure cache is healthy
	if: steps.cache.outputs.cache-hit == 'true'
	shell: bash
	run: poetry run pip --version > /dev/null 2>&1 \|\| { echo "Cache is stale, clearing cache and exiting." && rm -rf .venv && exit 1; }

	# Upgrade pip
	- name: Upgrade pip
	shell: bash
	run: poetry run python -m pip install --upgrade pip

	# Install dependencies
	- name: Install dependencies
	run: \|
	poetry install

	# Install dtaidistance
	- name: Install dtaidistance
	run: \|
	if [ "${{ matrix.python-version }}" != "3.10" ] && \
	[ "${{ matrix.python-version }}" != "3.11" ]; then \
	poetry run python -m pip install dtaidistance
	fi

	# Run pre-commit hooks
	#- name: Run pre-commit hooks
	# uses: pre-commit/[email protected]

	# Run tests
	- name: Test with pytest
	run: \|
	poetry run python -m pytest tests -vv --cov=src/ \
	--cov-report term --junitxml=report.xml
	# --cov-fail-under=${{ secrets.TEST_COVERAGE_THRESHOLD }} \

	# Generate coverage report
	- name: Generate coverage report
	run: \|
	poetry run python -m coverage xml
	poetry run pycobertura show coverage.xml --format html --output coverage.html
	if: always()

	# Convert coverage report to markdown
	- name: Install pandoc on macOS
	if: runner.os == 'macOS' && always()
	run: \|
	brew install pandoc

	- name: Convert coverage report to markdown (macOS)
	if: runner.os == 'macOS' && always()
	run: \|
	pandoc coverage.html -t gfm -o coverage.md

	- name: Convert coverage report to markdown (Ubuntu)
	uses: docker://pandoc/core:3.1
	if: runner.os == 'Linux' && always()
	with:
	args: "coverage.html -t gfm -o coverage.md"

	# Generate concise coverage report
	- name: Generate concise coverage report
	if: always()
	run: \|
	if [[ -f "coverage.md" ]]; then
	sed -n '/####/q;p' coverage.md > coverage_concise.md
	if grep -q "<div>" coverage_concise.md; then
	echo "</div>" >> coverage_concise.md
	else
	echo "Warning: No opening <div> tag found in coverage_concise.md."
	fi
	else
	echo "Error: coverage.md file not found."
	exit 1
	fi

	# Retrieve PR number to publish coverage report to
	- name: Retrieve PR number to publish coverage report to
	uses: jwalton/gh-find-current-pr@v1
	id: finder
	if: always()
	with:
	state: all
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

	# Add coverage report to PR
	#- name: Add coverage report to PR
	# uses: marocchino/sticky-pull-request-comment@v2
	# if: always()
	# with:
	# number: ${{ steps.finder.outputs.pr }}
	# recreate: true
	# path: coverage_concise.md

	# Upload coverage report
	#- name: Upload coverage report
	# uses: actions/upload-artifact@v2
	# with:
	# name: coverage
	# path: coverage.md

	# Publish coverage report to PR
	#- name: Publish coverage to PR
	# uses: codecov/codecov-action@v3
	# with:
	# token: ${{ secrets.CODECOV_TOKEN }}
	# fail_ci_if_error: true
	# verbose: true

	# commitlint:
	# runs-on: ubuntu-latest
	# steps:
	# - uses: actions/checkout@v3
	# with:
	# fetch-depth: 0
	# - uses: wagoid/commitlint-github-action@v4


	docs:
	name: Test docs build
	runs-on: ubuntu-latest

	steps:
	- name: Check out Git repository
	uses: actions/checkout@v3

	- name: Set up Python
	uses: actions/setup-python@v3
	with:
	python-version: 3.8

	- name: Install Poetry
	run: \|
	curl -sSL https://install.python-poetry.org \| python -

	# Add Poetry to PATH
	- name: Add Poetry to PATH
	run: echo "$HOME/.local/bin" >> $GITHUB_PATH

	# Cache Poetry dependencies
	- name: Cache Poetry dependencies
	uses: actions/cache@v3
	with:
	path: .venv
	key: venv-${{ runner.os }}-poetry-${{ hashFiles('**/poetry.lock') }}
	restore-keys: \|
	${{ runner.os }}-poetry-
	${{ runner.os }}-

	# Configure poetry
	- name: Configure poetry
	run: poetry config virtualenvs.in-project true

	# Install dependencies using poetry
	- name: Install dependencies
	run: \|
	poetry install

	# Install Sphinx
	- name: Install Sphinx
	run: poetry add sphinx

	# Build sphinx documentation
	- name: Build sphinx documentation
	run: \|
	cd docs
	poetry run make clean
	poetry run make html --debug --jobs 2 SPHINXOPTS="-W -v"

	# Upload built docs
	- name: Upload built docs
	uses: actions/upload-artifact@v2
	with:
	name: docs-results-${{ runner.os }}
	path: docs/build/html/
	# Use always() to always run this step to publish test results when there are test failures
	if: success()

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feat: remove `numba` #248

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feat: remove `numba` #248

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Workflow file for this run

feat: remove numba #248

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Workflow file for this run

feat: remove `numba` #248