Merge branch 'main' into debug_test

.github/workflows/docs.yml

@@ -0,0 +1,48 @@
+name: build-docs
+
+on:
+  workflow_dispatch:
+  push:
+    branches: [ main ]
+  release:
+    types: [ published ]
+
+# set GITHUB_TOKEN permissions to allow deployment to GitHub Pages
+permissions:
+  contents: write
+
+jobs:
+  docs:
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -l {0} # enables conda/mamba env activation by reading bash profile
+
+    env:
+      PYTHON_VERSION: "3.10"
+
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v4
+      - name: Set up micromamba
+        uses: mamba-org/setup-micromamba@main
+      - name: Create mamba environment
+        run: |
+            micromamba create -n autoplex_docs python=$PYTHON_VERSION --yes
+      - name: Install uv
+        run: micromamba run -n autoplex_docs pip install uv
+      - name: Install autoplex and dependencies
+        run: |
+            micromamba activate autoplex_docs
+            uv pip install --upgrade pip
+            uv pip install .[docs,strict]
+      - name: Build
+        run: micromamba run -n autoplex_docs sphinx-build -W docs _build
+      - name: Deploy to GitHub Pages
+        uses: peaceiris/actions-gh-pages@v3
+        if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
+        with:
+          publish_branch: gh-pages
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: _build/
+          force_orphan: true

.gitignore

@@ -52,6 +52,7 @@ coverage.xml
 .pytest_cache/
 cover/
 job*/
+submit*
 
 # Translations
 *.mo

.pre-commit-config.yaml

@@ -9,7 +9,7 @@ default_language_version:
   python: python3
 repos:
 - repo: https://github.com/charliermarsh/ruff-pre-commit
-  rev: v0.1.1
+  rev: v0.6.9
   hooks:
   - id: ruff
     args: [--fix]
@@ -22,11 +22,11 @@ repos:
   - id: end-of-file-fixer
   - id: trailing-whitespace
 - repo: https://github.com/psf/black
-  rev: 23.10.0
+  rev: 24.10.0
   hooks:
   - id: black
 - repo: https://github.com/asottile/blacken-docs
-  rev: 1.16.0
+  rev: 1.19.0
   hooks:
   - id: blacken-docs
     additional_dependencies: [black]
@@ -39,7 +39,7 @@ repos:
   - id: rst-directive-colons
   - id: rst-inline-touching-normal
 - repo: https://github.com/pre-commit/mirrors-mypy
-  rev: v1.6.1
+  rev: v1.11.2
   hooks:
   - id: mypy
     files: ^autoplex/.*\.py$
@@ -48,9 +48,9 @@ repos:
     - types-pkg_resources==0.1.2
     - types-paramiko
 - repo: https://github.com/codespell-project/codespell
-  rev: v2.2.6
+  rev: v2.3.0
   hooks:
   - id: codespell
-    stages: [commit, commit-msg]
+    stages: [pre-commit, pre-commit, commit-msg]
     args: [--ignore-words-list, 'titel,statics,ba,nd,te,atomate']
     types_or: [python, rst, markdown]