Smith Waterman

examples/apps/smith_waterman/Makefile

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+# Copyright (c) 2021, University of Washington All rights reserved.
+#
+# Redistribution and use in source and binary forms, with or without modification,
+# are permitted provided that the following conditions are met:
+#
+# Redistributions of source code must retain the above copyright notice, this list
+# of conditions and the following disclaimer.
+#
+# Redistributions in binary form must reproduce the above copyright notice, this
+# list of conditions and the following disclaimer in the documentation and/or
+# other materials provided with the distribution.
+#
+# Neither the name of the copyright holder nor the names of its contributors may
+# be used to endorse or promote products derived from this software without
+# specific prior written permission.
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+# ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
+# ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
+# ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+# This Makefile compiles, links, and executes examples Run `make help`
+# to see the available targets for the selected platform.
+
+################################################################################
+# environment.mk verifies the build environment and sets the following
+# makefile variables:
+#
+# LIBRAIRES_PATH: The path to the libraries directory
+# HARDWARE_PATH: The path to the hardware directory
+# EXAMPLES_PATH: The path to the examples directory
+# BASEJUMP_STL_DIR: Path to a clone of BaseJump STL
+# BSG_MANYCORE_DIR: Path to a clone of BSG Manycore
+###############################################################################
+
+REPLICANT_PATH:=$(shell git rev-parse --show-toplevel)
+
+include $(REPLICANT_PATH)/environment.mk
+SPMD_SRC_PATH = $(BSG_MANYCORE_DIR)/software/spmd
+CUDALITE_SRC_PATH = $(SPMD_SRC_PATH)/bsg_cuda_lite_runtime
+
+# KERNEL_NAME is the name of the CUDA-Lite Kernel
+KERNEL_NAME = smith_waterman
+
+###############################################################################
+# Host code compilation flags and flow
+###############################################################################
+
+# TEST_SOURCES is a list of source files that need to be compiled
+TEST_SOURCES = main.cpp
+
+DEFINES += -D_XOPEN_SOURCE=500 -D_BSD_SOURCE -D_DEFAULT_SOURCE
+CDEFINES +=
+CXXDEFINES +=
+
+FLAGS     = -g -Wall -Wno-unused-function -Wno-unused-variable
+CFLAGS   += -std=c99 $(FLAGS)
+CXXFLAGS += -std=c++11 $(FLAGS)
+
+# compilation.mk defines rules for compilation of C/C++
+include $(EXAMPLES_PATH)/compilation.mk
+
+###############################################################################
+# Host code link flags and flow
+###############################################################################
+
+LDFLAGS +=
+
+# link.mk defines rules for linking of the final execution binary.
+include $(EXAMPLES_PATH)/link.mk
+
+###############################################################################
+# Device code compilation flow
+###############################################################################
+
+# BSG_MANYCORE_KERNELS is a list of manycore executables that should
+# be built before executing.
+
+BSG_MANYCORE_KERNELS ?= kernel.riscv
+RISCV_INCLUDES  +=
+RISCV_CCPPFLAGS += -D__KERNEL__
+
+kernel.riscv: kernel.rvo
+
+TILE_GROUP_DIM_X ?= 16
+TILE_GROUP_DIM_Y ?= 8
+RISCV_DEFINES += -DTILE_GROUP_DIM_X=$(TILE_GROUP_DIM_X)
+RISCV_DEFINES += -DTILE_GROUP_DIM_Y=$(TILE_GROUP_DIM_Y)
+RISCV_DEFINES += -Dbsg_tiles_X=$(TILE_GROUP_DIM_X)
+RISCV_DEFINES += -Dbsg_tiles_Y=$(TILE_GROUP_DIM_Y)
+
+include $(EXAMPLES_PATH)/cuda/riscv.mk
+
+###############################################################################
+# Execution flow
+#
+# C_ARGS: Use this to pass arguments that you want to appear in argv
+#         For SPMD tests C arguments are: <Path to RISC-V Binary> <Test Name>
+#
+# SIM_ARGS: Use this to pass arguments to the simulator
+###############################################################################
+C_ARGS ?= $(BSG_MANYCORE_KERNELS) $(KERNEL_NAME)
+
+SIM_ARGS ?=
+
+# Include platform-specific execution rules
+include $(EXAMPLES_PATH)/execution.mk
+
+###############################################################################
+# Regression Flow
+###############################################################################
+
+regression: exec.log
+	@grep "BSG REGRESSION TEST .*PASSED.*" $< > /dev/null
+
+.DEFAULT_GOAL := help
+
+.PHONY: clean
+
+clean:
+	rm -rf *.ld
+