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- Add SNV_analysis step, output and report sections CI #32: Commit 20c7b25 pushed by Nicolai-vKuegelgen
October 25, 2024 14:11 1m 57s main
main
October 25, 2024 14:11 1m 57s
- Rename highimpact and highlight to stemcell_hotspot and cancer_gene CI #31: Commit 705a0fb pushed by Nicolai-vKuegelgen
October 22, 2024 14:12 1m 46s main
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October 22, 2024 14:12 1m 46s
small report table fixes CI #30: Commit 06b49a2 pushed by Nicolai-vKuegelgen
October 21, 2024 14:23 2m 7s main
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October 21, 2024 14:23 2m 7s
- Change static data structure in config to separate global and array… CI #29: Commit 08e351f pushed by Nicolai-vKuegelgen
October 21, 2024 14:02 1m 50s main
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October 21, 2024 14:02 1m 50s
Report improvements CI #28: Commit 3dd881d pushed by Nicolai-vKuegelgen
October 16, 2024 10:24 1m 49s main
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October 16, 2024 10:24 1m 49s
Several Fixes for report (chr/seqname factor levels, hotspot badge an… CI #27: Commit 1cc5f0a pushed by Nicolai-vKuegelgen
October 15, 2024 15:46 1m 50s main
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October 15, 2024 15:46 1m 50s
Fixes for report ROI section and summary-table with nested refs CI #26: Commit 72e0b68 pushed by Nicolai-vKuegelgen
September 27, 2024 15:49 1m 45s main
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September 27, 2024 15:49 1m 45s
Fixing CI CI #25: Commit 6a85c69 pushed by Nicolai-vKuegelgen
September 26, 2024 15:35 1m 44s main
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September 26, 2024 15:35 1m 44s
Fixing CI CI #24: Commit db96d32 pushed by Nicolai-vKuegelgen
September 26, 2024 15:25 1m 27s main
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September 26, 2024 15:25 1m 27s
Fixing CI CI #23: Commit 87e6c38 pushed by Nicolai-vKuegelgen
September 26, 2024 15:20 1m 45s main
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September 26, 2024 15:20 1m 45s
Fix issues with overlapping gband hotspots CI #22: Commit 92614bd pushed by Nicolai-vKuegelgen
September 26, 2024 15:10 35s main
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September 26, 2024 15:10 35s
Update hotspot table defaults: CI #21: Commit 3871f8d pushed by Nicolai-vKuegelgen
September 26, 2024 14:13 44s main
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September 26, 2024 14:13 44s
Merge branch 'refs/heads/stat_summary' CI #20: Commit 24ea410 pushed by Nicolai-vKuegelgen
September 18, 2024 15:55 7m 3s main
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September 18, 2024 15:55 7m 3s
Replace VEP annotation with mehari and enable it: CI #19: Commit 959bb05 pushed by Nicolai-vKuegelgen
August 28, 2024 15:02 2m 4s main
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August 28, 2024 15:02 2m 4s
Prevent base-R sample_id modification in CBS script CI #18: Commit 63fea00 pushed by Nicolai-vKuegelgen
August 27, 2024 07:58 2m 20s main
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August 27, 2024 07:58 2m 20s
Ensure columns needed for cnv-vcf writing are loaded and kept in the … CI #17: Commit 2a459b6 pushed by Nicolai-vKuegelgen
August 26, 2024 14:37 2m 6s main
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August 26, 2024 14:37 2m 6s
Remove chromosome definition from config. CI #16: Commit c251147 pushed by Nicolai-vKuegelgen
August 26, 2024 12:00 2m 13s main
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August 26, 2024 12:00 2m 13s
Fix GRCH37 genome fasta download, fix cache-dir setting issues. CI #15: Commit 20382a9 pushed by Nicolai-vKuegelgen
August 22, 2024 14:10 2m 17s main
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August 22, 2024 14:10 2m 17s
Fix target issue in staticdata creation. Update Readme. Cleanup lefto… CI #14: Commit 1424063 pushed by Nicolai-vKuegelgen
August 22, 2024 10:06 2m 1s main
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August 22, 2024 10:06 2m 1s
snakefmt CI #13: Commit 1753b84 pushed by Nicolai-vKuegelgen
August 22, 2024 08:41 1m 59s main
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August 22, 2024 08:41 1m 59s
Remove genome faste from static-data block (now moved to global setti… CI #12: Commit a045a9d pushed by Nicolai-vKuegelgen
August 22, 2024 07:50 2m 10s main
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August 22, 2024 07:50 2m 10s
Fix tests und & remove default channel from conda CI #11: Commit 37828b3 pushed by Nicolai-vKuegelgen
August 21, 2024 15:01 2m 20s main
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August 21, 2024 15:01 2m 20s
Update to snakemake8, make apptainer non-optional, make python/snakem… CI #10: Commit c43a4cc pushed by Nicolai-vKuegelgen
July 31, 2024 14:04 2m 15s main
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July 31, 2024 14:04 2m 15s
remove issues with snakemake and {{ escaping in format strings CI #9: Commit 1fe8fdb pushed by Nicolai-vKuegelgen
July 30, 2024 15:25 2m 13s main
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July 30, 2024 15:25 2m 13s
Rename default sample_table to tsv, part2 CI #8: Commit 28414bf pushed by Nicolai-vKuegelgen
July 25, 2024 14:28 2m 23s main
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July 25, 2024 14:28 2m 23s