refactor!: Move ISA-Tab templates into a separate repository (#96)

[mikkonie]

This is a pull request for #96.

The new separate template repo cubi-isa-templates can be found here.

This is still a draft, please comment or improve as you need fit. I haven't published the package on PyPI yet and I don't recommend merging this until there's a proper PyPI dependency.

I've been unable to test this locally because I run into some errors with varfish-cli dependencies (see below). Some cubi-tk expert might want to tell me what I'm doing wrong.

[mikkonie]

Getting the following conflict locally: pkg_resources.ContextualVersionConflict: (attrs 23.1.0 (/home/mikkopen/.virtualenvs/cubi-tk/lib/python3.8/site-packages), Requirement.parse('attrs<22.0,>=21.2.0'), {'varfish-cli'})

Once I attempt installing the expected depdndencies, the result is:

pkg_resources.ContextualVersionConflict: (attrs 23.1.0 (/home/mikkopen/.virtualenvs/cubi-tk/lib/python3.8/site-packages), Requirement.parse('attrs<22.0,>=21.2.0'), {'varfish-cli'})

Traceback (most recent call last):
  File "/home/mikkopen/.virtualenvs/cubi-tk/bin/cubi-tk", line 11, in <module>
    load_entry_point('cubi-tk', 'console_scripts', 'cubi-tk')()
  File "/home/mikkopen/.virtualenvs/cubi-tk/lib/python3.8/site-packages/pkg_resources/__init__.py", line 489, in load_entry_point
    return get_distribution(dist).load_entry_point(group, name)
  File "/home/mikkopen/.virtualenvs/cubi-tk/lib/python3.8/site-packages/pkg_resources/__init__.py", line 2852, in load_entry_point
    return ep.load()
  File "/home/mikkopen/.virtualenvs/cubi-tk/lib/python3.8/site-packages/pkg_resources/__init__.py", line 2443, in load
    return self.resolve()
  File "/home/mikkopen/.virtualenvs/cubi-tk/lib/python3.8/site-packages/pkg_resources/__init__.py", line 2449, in resolve
    module = __import__(self.module_name, fromlist=['__name__'], level=0)
  File "/home/mikkopen/code/cubi-tk/cubi_tk/__main__.py", line 26, in <module>
    from .sea_snap import run as run_sea_snap
  File "/home/mikkopen/code/cubi-tk/cubi_tk/sea_snap/__init__.py", line 26, in <module>
    from .itransfer_raw_data import setup_argparse as setup_argparse_itransfer_raw_data
  File "/home/mikkopen/code/cubi-tk/cubi_tk/sea_snap/itransfer_raw_data.py", line 7, in <module>
    from ..snappy.itransfer_common import SnappyItransferCommandBase
  File "/home/mikkopen/code/cubi-tk/cubi_tk/snappy/__init__.py", line 56, in <module>
    from .varfish_upload import setup_argparse as setup_argparse_varfish_upload
  File "/home/mikkopen/code/cubi-tk/cubi_tk/snappy/varfish_upload.py", line 11, in <module>
    from varfish_cli.__main__ import main as varfish_cli_main
  File "/home/mikkopen/.virtualenvs/cubi-tk/lib/python3.8/site-packages/varfish_cli/__main__.py", line 13, in <module>
    from varfish_cli.case import run as run_case
  File "/home/mikkopen/.virtualenvs/cubi-tk/lib/python3.8/site-packages/varfish_cli/case/__init__.py", line 9, in <module>
    from varfish_cli.case.list_case import setup_argparse as setup_argparse_list
  File "/home/mikkopen/.virtualenvs/cubi-tk/lib/python3.8/site-packages/varfish_cli/case/list_case.py", line 9, in <module>
    import attrs
ModuleNotFoundError: No module named 'attrs'

[github-actions]

Please format your code with black: make black.

[sellth]

Tests run fine for me. Had similar issues until I realised that pytest was not called from my venv but from .local/bin

[codecov]

Codecov Report

Patch coverage: 93.10% and project coverage change: -0.11% ⚠️

Comparison is base (3939f83) 75.59% compared to head (76fa3cc) 75.48%.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #170      +/-   ##
==========================================
- Coverage   75.59%   75.48%   -0.11%     
==========================================
  Files          98       98              
  Lines        7806     7767      -39     
==========================================
- Hits         5901     5863      -38     
+ Misses       1905     1904       -1     

Files Changed	Coverage Δ
cubi_tk/isa_tpl/__init__.py	95.00% <71.42%> (ø)
cubi_tk/archive/readme.py	83.23% <100.00%> (ø)
tests/test_isa_tpl.py	100.00% <100.00%> (ø)

... and 4 files with indirect coverage changes

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