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clog format: 1; -*-outline-*- | ||
* HEAD (2023-11-13) | ||
Changes since 0.6.5 (2021-12-10). | ||
** Special Attention | ||
** Deprecations and Removals | ||
** Bug Fixes | ||
*** Close #112: make-fastadir-thread-safe [fc76b79] (Kyle Ferriter) | ||
*** Investigate balancing threading with fd exhaustion [8e94914] (Reece Hart) | ||
*** updated threading test code and added README [00d8cda] (Reece Hart) | ||
*** Add explicit close to FastaFiles and sqlite3 cursors. Add contextmanager locking around cached open FabgzReaders [7a85d24] (Kyle Ferriter) | ||
*** Make tests pass. Don't assume /tmp is the OS tmpfile path. [701f0b3] (Kyle Ferriter) | ||
** New Features | ||
** Other Changes | ||
*** Update README.md [e12bb24] (Manuel Holtgrewe) | ||
*** README.md: install necessary packages with apt [69fc309] (Reece Hart) | ||
*** add CITATION.cff [fbf3b29] (Alan Rubin) | ||
** Internal and Developer Changes | ||
*** migrated setup.cfg to pyproject.toml [ee80d92] (Reece Hart) | ||
*** migrated from deprecated pkg_resources to importlib.resources [0eda8b2] (Reece Hart) | ||
*** add markers to pytest.ini [9a2f3ae] (Reece Hart) | ||
*** update .github from biocommons.example [e7555ea] (Reece Hart) | ||
*** Add GitHub Actions for testing, linting, and code formatting | ||
*** Update to work for OSX users [fcfbcfe] (Dylan Reinhardt) |
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HEAD (2023-11-13) | ||
################## | ||
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Changes since 0.6.5 (2021-12-10). | ||
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Special Attention | ||
$$$$$$$$$$$$$$$$$$ | ||
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||
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||
Deprecations and Removals | ||
$$$$$$$$$$$$$$$$$$$$$$$$$$ | ||
|
||
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||
Bug Fixes | ||
$$$$$$$$$$ | ||
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||
* Close `#112 <https://github.com/biocommons/biocommons.seqrepo/issues/112/>`_: make-fastadir-thread-safe [`fc76b79 <https://github.com/biocommons/biocommons.seqrepo/commit/fc76b79>`_] (Kyle Ferriter) | ||
* Investigate balancing threading with fd exhaustion [`8e94914 <https://github.com/biocommons/biocommons.seqrepo/commit/8e94914>`_] (Reece Hart) | ||
* updated threading test code and added README [`00d8cda <https://github.com/biocommons/biocommons.seqrepo/commit/00d8cda>`_] (Reece Hart) | ||
* Add explicit close to FastaFiles and sqlite3 cursors. Add contextmanager locking around cached open FabgzReaders [`7a85d24 <https://github.com/biocommons/biocommons.seqrepo/commit/7a85d24>`_] (Kyle Ferriter) | ||
* Make tests pass. Don't assume /tmp is the OS tmpfile path. [`701f0b3 <https://github.com/biocommons/biocommons.seqrepo/commit/701f0b3>`_] (Kyle Ferriter) | ||
|
||
New Features | ||
$$$$$$$$$$$$$ | ||
|
||
|
||
Other Changes | ||
$$$$$$$$$$$$$$ | ||
|
||
* Update README.md [`e12bb24 <https://github.com/biocommons/biocommons.seqrepo/commit/e12bb24>`_] (Manuel Holtgrewe) | ||
* README.md: install necessary packages with apt [`69fc309 <https://github.com/biocommons/biocommons.seqrepo/commit/69fc309>`_] (Reece Hart) | ||
* add CITATION.cff [`fbf3b29 <https://github.com/biocommons/biocommons.seqrepo/commit/fbf3b29>`_] (Alan Rubin) | ||
|
||
Internal and Developer Changes | ||
$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$ | ||
|
||
* migrated setup.cfg to pyproject.toml [`ee80d92 <https://github.com/biocommons/biocommons.seqrepo/commit/ee80d92>`_] (Reece Hart) | ||
* migrated from deprecated pkg_resources to importlib.resources [`0eda8b2 <https://github.com/biocommons/biocommons.seqrepo/commit/0eda8b2>`_] (Reece Hart) | ||
* add markers to pytest.ini [`9a2f3ae <https://github.com/biocommons/biocommons.seqrepo/commit/9a2f3ae>`_] (Reece Hart) | ||
* update .github from biocommons.example [`e7555ea <https://github.com/biocommons/biocommons.seqrepo/commit/e7555ea>`_] (Reece Hart) | ||
* Add GitHub Actions for testing, linting, and code formatting | ||
* Update to work for OSX users [`fcfbcfe <https://github.com/biocommons/biocommons.seqrepo/commit/fcfbcfe>`_] (Dylan Reinhardt) |