Skip to content

Commit

Permalink
#688 - remove __future__ usage
Browse files Browse the repository at this point in the history
  • Loading branch information
davmlaw authored and andreasprlic committed Feb 20, 2024
1 parent 0c4c5d7 commit 4a44582
Show file tree
Hide file tree
Showing 60 changed files with 0 additions and 120 deletions.
2 changes: 0 additions & 2 deletions sbin/conf-to-vars
Original file line number Diff line number Diff line change
@@ -1,7 +1,5 @@
#!/usr/bin/env python

from __future__ import print_function

__doc__ = """
Print conf file as variable assignments.
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -49,8 +49,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import logging
import re
import sys
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/alignmentmapper.py
Original file line number Diff line number Diff line change
Expand Up @@ -27,8 +27,6 @@
#


from __future__ import absolute_import, division, print_function, unicode_literals

from bioutils.coordinates import strand_int_to_pm
from six.moves import range

Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/assemblymapper.py
Original file line number Diff line number Diff line change
@@ -1,7 +1,5 @@
# -*- coding: utf-8 -*-

from __future__ import absolute_import, division, print_function, unicode_literals

import logging

import hgvs
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/config.py
Original file line number Diff line number Diff line change
Expand Up @@ -27,8 +27,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import logging
import re
from configparser import ConfigParser, ExtendedInterpolation
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/dataproviders/interface.py
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import abc
import os

Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/dataproviders/seqfetcher.py
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import logging
import os

Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/dataproviders/uta.py
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import contextlib
import inspect
import logging
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/decorators/deprecated.py
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import collections
import warnings

Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/decorators/lru_cache.py
Original file line number Diff line number Diff line change
Expand Up @@ -11,8 +11,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

from collections import namedtuple
from functools import update_wrapper
from threading import RLock
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/edit.py
Original file line number Diff line number Diff line change
Expand Up @@ -9,8 +9,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import attr
import six
from bioutils.sequences import aa1_to_aa3, aa_to_aa1
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/exceptions.py
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals


class HGVSError(Exception):
pass
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/hgvsposition.py
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import attr


Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/intervalmapper.py
Original file line number Diff line number Diff line change
Expand Up @@ -42,8 +42,6 @@
start_i and minimal end_i.
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import logging
import re

Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/location.py
Original file line number Diff line number Diff line change
Expand Up @@ -15,8 +15,6 @@
* :class:`Interval` -- an interval of Positions
"""

from __future__ import absolute_import, division, print_function, unicode_literals

from functools import total_ordering

import attr
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/normalizer.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,6 @@
"""hgvs.normalizer
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import copy
import logging

Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/parser.py
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import copy
import logging
import re
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/posedit.py
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import attr

from hgvs.enums import ValidationLevel
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/projector.py
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import copy

import hgvs
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/sequencevariant.py
Original file line number Diff line number Diff line change
@@ -1,8 +1,6 @@
# -*- coding: utf-8 -*-
""" represents simple sequence-based variants """

from __future__ import absolute_import, division, print_function, unicode_literals

import attr

import hgvs.variantmapper
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/shell.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,6 @@
"""start IPython shell with hgvs initialized. Intended to be used for
experimenting, debugging, and generating bug reports."""

from __future__ import absolute_import, division, print_function, unicode_literals

import logging
import os

Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/transcriptmapper.py
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import logging

from bioutils.coordinates import strand_int_to_pm
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/utils/__init__.py
Original file line number Diff line number Diff line change
@@ -1,7 +1,5 @@
# -*- coding: utf-8 -*-

from __future__ import absolute_import, division, print_function, unicode_literals

import re


Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/utils/altseq_to_hgvsp.py
Original file line number Diff line number Diff line change
Expand Up @@ -5,8 +5,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

from six.moves import range

import hgvs
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/utils/altseqbuilder.py
Original file line number Diff line number Diff line change
Expand Up @@ -6,8 +6,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import logging
import math

Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/utils/context.py
Original file line number Diff line number Diff line change
Expand Up @@ -23,8 +23,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import re

from bioutils.sequences import complement
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/utils/norm.py
Original file line number Diff line number Diff line change
Expand Up @@ -5,8 +5,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

from collections import namedtuple

from six.moves import range
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/utils/orderedenum.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals

from enum import Enum


Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/validator.py
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import logging

import hgvs
Expand Down
2 changes: 0 additions & 2 deletions src/hgvs/variantmapper.py
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,6 @@
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import copy
import logging

Expand Down
2 changes: 0 additions & 2 deletions tests/bin/build-ref-repl
Original file line number Diff line number Diff line change
@@ -1,8 +1,6 @@
#!/usr/bin/env python
# -*- coding: utf-8 -*-

from __future__ import absolute_import, division, print_function, unicode_literals

"""Builds reference replacement test sets"""

import logging
Expand Down
2 changes: 0 additions & 2 deletions tests/bin/connpool-stress-test
Original file line number Diff line number Diff line change
Expand Up @@ -10,8 +10,6 @@ With 0.4.5a4.post0, it runs until terminated (several runs of at least two minut
https://github.com/biocommons/hgvs/issues/321/
"""

from __future__ import absolute_import, division, print_function, unicode_literals

import gzip
import logging
import random
Expand Down
2 changes: 0 additions & 2 deletions tests/fx-test/test_variant_length.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals

import os
import unittest

Expand Down
2 changes: 0 additions & 2 deletions tests/issues/test_02xx.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals

import os
import unittest

Expand Down
2 changes: 0 additions & 2 deletions tests/issues/test_03xx.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals

import os
import unittest

Expand Down
2 changes: 0 additions & 2 deletions tests/issues/test_04xx.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals

import os
import unittest

Expand Down
2 changes: 0 additions & 2 deletions tests/issues/test_05xx.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals

import os
import unittest

Expand Down
2 changes: 0 additions & 2 deletions tests/support/crosschecker.py
Original file line number Diff line number Diff line change
@@ -1,5 +1,3 @@
from __future__ import absolute_import, division, print_function, unicode_literals

import itertools

from six.moves import map
Expand Down
2 changes: 0 additions & 2 deletions tests/support/mock_input_source.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals

import csv

# Mock test input source
Expand Down
2 changes: 0 additions & 2 deletions tests/test_clinvar.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals

import csv
import gzip
import io
Expand Down
2 changes: 0 additions & 2 deletions tests/test_hgvs_alignmentmapper.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals

import os
import unittest

Expand Down
2 changes: 0 additions & 2 deletions tests/test_hgvs_assemblymapper.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals

import os
import unittest

Expand Down
2 changes: 0 additions & 2 deletions tests/test_hgvs_dataproviders_uta.py
Original file line number Diff line number Diff line change
@@ -1,8 +1,6 @@
# -*- coding: utf-8 -*-
"""Tests uta postgresql client"""

from __future__ import absolute_import, division, print_function, unicode_literals

import os
import re
import unittest
Expand Down
2 changes: 0 additions & 2 deletions tests/test_hgvs_edit.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals

import unittest

import pytest
Expand Down
2 changes: 0 additions & 2 deletions tests/test_hgvs_grammar.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals

import unittest

import pytest
Expand Down
2 changes: 0 additions & 2 deletions tests/test_hgvs_grammar_full.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals

import os
import pprint
import re
Expand Down
2 changes: 0 additions & 2 deletions tests/test_hgvs_hgvsposition.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals

import unittest

import pytest
Expand Down
2 changes: 0 additions & 2 deletions tests/test_hgvs_location.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals

import unittest

import pytest
Expand Down
Loading

0 comments on commit 4a44582

Please sign in to comment.