Code

Uncertain ranges#699

Code

Open

theferrit32 wants to merge 22 commits intomainbiocommons/hgvs:mainfrom 225-uncertain-rangesbiocommons/hgvs:225-uncertain-rangesCopy head branch name to clipboard

+2,373-2,389

Commits

Commits on Sep 20, 2023

• Support indefinite and definite uncertain ranges, and unbalanced uncertain ranges, for g. expressions

  theferrit32

  committed
  5054739

  Copy full SHA for 5054739

• Rebuild hgvs grammar due to whitespace changes

  theferrit32

  committed
  1f624ad

  Copy full SHA for 1f624ad

Commits on Dec 11, 2023

• Merge branch 'main' into 225-uncertain-ranges

  andreasprlic

  committed
  2bcccc2

  Copy full SHA for 2bcccc2

• Merge branch '712-fix-dev-install' into 225-uncertain-ranges

  andreasprlic

  committed
  722b142

  Copy full SHA for 722b142

• feat(test): minor addition to test to make sure the breakpoints are uncertain

  andreasprlic

  committed
  c15c552

  Copy full SHA for c15c552

Commits on Dec 12, 2023

• feat(g_to_c): this adds support for g_to_c of uncertain coordinates. Since the behavior is a bit unspecified, we fall back to the inner (confident) interval of the uncertain range for this projection.

  andreasprlic

  committed
  8a4341a

  Copy full SHA for 8a4341a

• Merge branch 'main' into 225-uncertain-ranges

  andreasprlic

  authored
  1983654

  Copy full SHA for 1983654

Commits on Feb 20, 2024

• update CODEOWNERS to @biocommons/maintainers

  

  reece

  authored and

  andreasprlic

  committed
  2e4ae22

  Copy full SHA for 2e4ae22

• use shared stale action configuration

  

  reece

  authored and

  andreasprlic

  committed
  82d7331

  Copy full SHA for 82d7331

• import and standardize issue templates from biocommons.example

  

  Reece Hart

  authored and

  andreasprlic

  committed
  a045165

  Copy full SHA for a045165

• add standardized github labels and update action

  

  Reece Hart

  authored and

  andreasprlic

  committed
  43a556c

  Copy full SHA for 43a556c

• expose clearer name for label sync action

  

  Reece Hart

  authored and

  andreasprlic

  committed
  3ea0c5c

  Copy full SHA for 3ea0c5c

• remove .github/ISSUE_TEMPLATE (in order to use templates in .github repo instead)

  

  Reece Hart

  authored and

  andreasprlic

  committed
  1e2a433

  Copy full SHA for 1e2a433

• migrate to endbug/label-sync with biocommons-wide label config

  

  Reece Hart

  authored and

  andreasprlic

  committed
  0c4c5d7

  Copy full SHA for 0c4c5d7

• #688 - remove __future__ usage

  

  davmlaw

  authored and

  andreasprlic

  committed
  4a44582

  Copy full SHA for 4a44582

• #695 - Remove top level code environment scripts from modules

  

  davmlaw

  authored and

  andreasprlic

  committed
  6056847

  Copy full SHA for 6056847

• update stale action to use stale.yml from worfklow-template

  

  Reece Hart

  authored and

  andreasprlic

  committed
  cce1c6f

  Copy full SHA for cce1c6f

• feat(imprecise hgvs_c): adding support to create imprecise hgvs_c s.

  andreasprlic

  committed
  261245a

  Copy full SHA for 261245a

• Merge branch 'main' into 225-uncertain-ranges

  andreasprlic

  authored
  52adbe9

  Copy full SHA for 52adbe9

Commits on Feb 21, 2024

• feat(imprecise g_to_c): g_to_c now works. c_to_g not working yet. Requires parser modifications still. This PR contains unit tests that are still broken, but should parse once we got the c. parsing…

  Show description for 609244a
  andreasprlic

  committed
  609244a

  Copy full SHA for 609244a

Commits on Feb 24, 2024

• feat(cleanup): removing broken c_to_g unit test for imprecise events.

  andreasprlic

  committed
  0364f37

  Copy full SHA for 0364f37

Commits on Mar 11, 2024

• Simplify parser to use None for single-digit intervals. Fixed format for uncertain intervals. Add test cases.

  theferrit32

  committed
  4c7ecbf

  Copy full SHA for 4c7ecbf