update khmer #49276
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update khmer #49276
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oops. looks like i duplicated this in PR #49350. maybe this PR should be closed? |
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closing in favor of the merged #49350 |
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reopening, since it looks like we'll need it |
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tests passed, but it didn't actually build anything. |
This reverts commit d668c95. it failed. reverting
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i have a hunch that the problem is with the patch. the highest release that the khmer github page lists is 2.1.2. i'm not sure where the 3.0+ versions are coming from other than the patch. |
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I made PR #49494 just to update the build failure file (recipes/khmer/build_failure.linux-64.yaml) on master so it doesn't try to build it on the nightly in the current broken state, but that build_failure file can be removed on this branch once my PR is merged to master and then this branch updated from master. |
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not sure why this is failing, but it looks like a certain folder ( |
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For whatever reason, it cannot find the directory where the included header files for |
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giving up for now. |
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khmer does not play well with python 3.12 and so I have updated the requirement. More information: dib-lab/khmer#1927
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