Test suite execution bug

bioforensics · Nov 21, 2022 · 5c62f43 · 5c62f43
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -2,6 +2,11 @@
 All notable changes to this project will be documented in this file.
 This project adheres to [Semantic Versioning](http://semver.org/).
 
+## [0.8.2] 2022-11-21
+
+### Fixed
+- Test suite execution bug.
+
 ## [0.8.1] 2022-11-21
 
 ### Fixed

diff --git a/Makefile b/Makefile
@@ -6,7 +6,7 @@ help: Makefile
 
 ## test:      execute the automated test suite
 test:
-	pytest --cov=microhapdb --cov-report=term --cov-report=xml --doctest-modules microhapdb/cli/*.py microhapdb/marker.py microhapdb/population.py microhapdb/tests/test_*.py
+	pytest --cov=microhapdb --cov-report=term --cov-report=xml --doctest-modules --pyargs microhapdb
 
 ## devdeps:   install development dependencies
 devdeps:

diff --git a/microhapdb/__init__.py b/microhapdb/__init__.py
@@ -63,13 +63,13 @@ def retrieve_by_id(ident):
 
     >>> retrieve_by_id("mh17KK-014")
                Name          PermID Reference  Chrom                  Offsets      Ae      In     Fst  Source
-    510  mh17KK-014  MHDBM-83a239de    GRCh38  chr17  4497060,4497088,4497096  2.0215  0.6423  0.3014  ALFRED
+    529  mh17KK-014  MHDBM-83a239de    GRCh38  chr17  4497060,4497088,4497096  2.0215  0.6423  0.3014  ALFRED
     >>> retrieve_by_id("SI664726F")
                Name          PermID Reference  Chrom                  Offsets      Ae      In     Fst  Source
-    510  mh17KK-014  MHDBM-83a239de    GRCh38  chr17  4497060,4497088,4497096  2.0215  0.6423  0.3014  ALFRED
+    529  mh17KK-014  MHDBM-83a239de    GRCh38  chr17  4497060,4497088,4497096  2.0215  0.6423  0.3014  ALFRED
     >>> retrieve_by_id("MHDBM-ea520d26")
                Name          PermID Reference  Chrom                              Offsets      Ae      In     Fst  Source
-    539  mh18KK-285  MHDBM-ea520d26    GRCh38  chr18  24557354,24557431,24557447,24557489  2.7524  0.1721  0.0836  ALFRED
+    559  mh18KK-285  MHDBM-ea520d26    GRCh38  chr18  24557354,24557431,24557447,24557489  2.7524  0.1721  0.0836  ALFRED
     >>> retrieve_by_id("PJL")
          ID                           Name Source
     82  PJL  Punjabi from Lahore, Pakistan   1KGP