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Replaced pooled global Aes with population average Aes #155

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merged 9 commits into from
Sep 25, 2024
Merged

Replaced pooled global Aes with population average Aes #155

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3d2d271
Global Aes are now population averages rather than pooled [skip ci]
Sep 24, 2024
f9e055f
Update change log
Sep 24, 2024
b6e7e48
Merge branch "master"
Sep 24, 2024
5684ec5
Fixing code [skip ci]
Sep 25, 2024
6fb60b5
New 1KGP Ae scores
Sep 25, 2024
1707b77
Put new data into place [skip ci]
Sep 25, 2024
c9a1628
Fix test suite
Sep 25, 2024
467677e
Remove extraneous file
Sep 25, 2024
45cd4ba
Troubleshoot CI
Sep 25, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -6,6 +6,7 @@ This project adheres to [Semantic Versioning](http://semver.org/).

### Fixed
- Debugged a test that counts observed haplotypes (#154).
- Replaced global pooled Ae values with 26-population average as the default Ae reported (#155).
- Replaced deprecated `pkg_resources` module with `importlib.resources` (#156).
- Upgraded versioneer to a Python 3.12+ compatible version (#156).

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2 changes: 1 addition & 1 deletion dbbuild/build-summary.txt
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Expand Up @@ -3034,7 +3034,7 @@ Marker mh11KK-040 as defined in Staadig2021 was defined previously and is redund
- 59 marker definitions based on 658 SNPs
[Byrska-Bishop2022]
- 31 population samples
- frequencies for 59233 distinct haplotypes in 31 populations; 856067 total frequencies
- frequencies for 59233 distinct haplotypes in 30 populations; 796834 total frequencies
[Fan2022]
- 22 marker definitions based on 338 SNPs and 25 indels
[Yu2022G1]
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