Skip to content
@bionomia

Bionomia

Linking natural history specimens to the world's collectors
README.md

image

Bionomia is a web application that lives at https://bionomia.net whose MIT-licensed code is at https://github.com/bionomia/bionomia. Data about natural history specimens are periodically refreshed from the Global Biodiversity Information Facility from an avro-based download, processed using Apache Spark and sidekiq, then presented for ORCID-based OAuth2-authenticated people to claim or attribute to others with an ORCID or a wikidata Q number. Data and links are additionally archived to Zenodo.

Person name parsing is done through the dwc_agent ruby gem to build an Elasticsearch index. Parsing outputs can be explored at https://bionomia.net/parse.

Pinned Loading

  1. bionomia bionomia Public

    Sinatra app to parse people names from biodiversity occurrence data, apply basic regular expressions and heuristics to disambiguate them, and to make these occurrence records as entities that can b…

    Haml 14 7

  2. dwc_agent dwc_agent Public

    Ruby gem to cleanse Darwin Core terms containing people names prior to passing to its dependent parser. Comes with a command-line utility.

    Ruby 5 1

Repositories

Showing 9 of 9 repositories
  • bionomia Public

    Sinatra app to parse people names from biodiversity occurrence data, apply basic regular expressions and heuristics to disambiguate them, and to make these occurrence records as entities that can be claimed by people via ORCID.

    bionomia/bionomia’s past year of commit activity
    Haml 14 MIT 7 53 0 Updated Nov 12, 2024
  • dwc_agent Public

    Ruby gem to cleanse Darwin Core terms containing people names prior to passing to its dependent parser. Comes with a command-line utility.

    bionomia/dwc_agent’s past year of commit activity
    Ruby 5 MIT 1 6 0 Updated Nov 8, 2024
  • bionomia-api Public

    API for Bionomia

    bionomia/bionomia-api’s past year of commit activity
    Ruby 0 MIT 0 1 0 Updated Nov 7, 2024
  • bionomia-img Public

    Image manipulator/cacher.

    bionomia/bionomia-img’s past year of commit activity
    Ruby 0 MIT 0 0 0 Updated Nov 5, 2024
  • .github Public
    bionomia/.github’s past year of commit activity
    0 0 0 0 Updated Dec 29, 2023
  • bionomia-chrome Public

    Chrome Extension

    bionomia/bionomia-chrome’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated May 20, 2023
  • bionomia-firefox Public

    Firefox Add-on

    bionomia/bionomia-firefox’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Apr 4, 2023
  • capitalize-names Public Forked from infiton/capitalize-names

    Simple proper name capitalization that handles edge cases

    bionomia/capitalize-names’s past year of commit activity
    Ruby 0 MIT 8 0 0 Updated Apr 7, 2021
  • bionomia-sheets Public

    Google Sheets Add-on for Bionomia

    bionomia/bionomia-sheets’s past year of commit activity
    HTML 1 MIT 0 0 0 Updated Dec 9, 2020

Top languages

Loading…

Most used topics

Loading…