Run_sspace-longread is an optimized edition of SSPACE-LongRead. We use the software mecat and minimap2 to align the raw Pacbio reads to the assembled contigs or scaffold insteading of blasr. Both of them have a higher efficiency than the software blasr, which is nearly 10 times faster.
forked from xuguoliang1/Run_sspace-longread
-
Notifications
You must be signed in to change notification settings - Fork 0
bitcometz/Run_sspace-longread
About
Run_sspace-longread: an optimized version of SSPACE-LongRead
Resources
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published
Languages
- Python 85.6%
- Batchfile 7.1%
- Makefile 5.3%
- CSS 2.0%