Update diagnostics vignette

bodkan · Oct 15, 2024 · 4d88b69 · 4d88b69
1 parent 9536f32
commit 4d88b69
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/vignettes/vignette-06-diagnostics.Rmd b/vignettes/vignette-06-diagnostics.Rmd
@@ -20,6 +20,7 @@ knitr::opts_chunk$set(
   eval = slendr_present
 )
 
+devtools::install(upgrade = FALSE)
 devtools::load_all()
 
 dataX_path <- here::here("inst/examples/downstream_dataX.rds")
@@ -250,17 +251,17 @@ tstart <- Sys.time()
 
 ```{r, eval=!data_exists}
 dataX <- simulate_abc(modelX, priors, functions, observed, iterations = 10000,
-                      sequence_length = 50e6, recombination_rate = 1e-8, mutation_rate = 1e-8)
+                      sequence_length = 10e6, recombination_rate = 1e-8, mutation_rate = 1e-8)
 ```
 
 ```{r, eval=!data_exists}
 dataY <- simulate_abc(modelY, priors, functions, observed, iterations = 10000,
-                      sequence_length = 50e6, recombination_rate = 1e-8, mutation_rate = 1e-8)
+                      sequence_length = 10e6, recombination_rate = 1e-8, mutation_rate = 1e-8)
 ```
 
 ```{r, eval=!data_exists}
 dataZ <- simulate_abc(modelZ, priors, functions, observed, iterations = 10000,
-                      sequence_length = 50e6, recombination_rate = 1e-8, mutation_rate = 1e-8)
+                      sequence_length = 10e6, recombination_rate = 1e-8, mutation_rate = 1e-8)
 ```
 
 ```{r, eval=!data_exists, echo=FALSE}